Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0850 ATGAACACAAAAGCAGTGCAAGTTATGGCATTGTTTCTCTTCCTTCTTGCATGGTTTCCTAGTGGCTCCTATGGCCAAGCGGGTGGGTGGCGCCCTGCACATGCCACATTCTATGGTGGTCCTGATGCTGCTGGCACAATGGGGGGAGCATGCGGATATGGAAACTTGTTTGCCCAAGGGTATGGAAAAAACACAGCAGCGTTAAGCACTGCCCTTTACAACGGTGGGCTATCATGTGGTGCATGTTTCCAAGTTATGTGTCGCGATGACCCACAGTGGTGCATCCGTGGTGGAAGCGTCACAGTCACTGCAACAAACTATTGTCCTCCCAATGCCTCTCCCTCCAATGGCCCTGGTTGGTGCAACCCCCCTTTGCAACACTTCGATTTGTCAGAGCCAGCGTTCCTACAAATTGCTCAATACCGTGCTGGAATCGTTCCTGTCTACTTCAGAAGGGTGACATGCGTGAAGAGCGGAGGAATAAGGTTCACAATAACAGGGAATAGATACTTCAATTTGGTGTTGGTAACAAATGTGGGAGGAGCAGGAGATGTAAAAGCATTGTCAGTGATGGTAGCTCCATCAAGTGAATGGATGCCAGCGAGAAGAAACTGGGGTCAGAATTGGCAGCTTAATGTGCCTCTGGTTGGTAGTAGCCTCTCTTTCATGGTCACAACCAGTGATGGTCGATCAGTAGCTAGTTACAATGTTATGCCTTCTAATTGGCAATTTGGTGTGACCTATGAAGGTCGTGCTCAATTTTAA 765 0.485 MNTKAVQVMALFLFLLAWFPSGSYGQAGGWRPAHATFYGGPDAAGTMGGACGYGNLFAQGYGKNTAALSTALYNGGLSCGACFQVMCRDDPQWCIRGGSVTVTATNYCPPNASPSNGPGWCNPPLQHFDLSEPAFLQIAQYRAGIVPVYFRRVTCVKSGGIRFTITGNRYFNLVLVTNVGGAGDVKALSVMVAPSSEWMPARRNWGQNWQLNVPLVGSSLSFMVTTSDGRSVASYNVMPSNWQFGVTYEGRAQF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0850 254 PANTHER EXPANSIN-A15 7 251 IPR002963 GO:0009664
Apr10g0850 254 SMART dpbb_1 65 150 IPR007112 -
Apr10g0850 254 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Apr10g0850 254 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Apr10g0850 254 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Apr10g0850 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Apr10g0850 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Apr10g0850 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Apr10g0850 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Apr10g0850 254 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Apr10g0850 254 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Apr10g0850 254 Gene3D - 20 155 IPR036908 -
Apr10g0850 254 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Apr10g0850 254 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Apr10g0850 254 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Apr10g0850 254 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Apr10g0850 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Apr10g0850 254 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Apr10g0850 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Apr10g0850 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Apr10g0850 254 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Apr10g0850 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
Apr10g0850 254 SUPERFAMILY Barwin-like endoglucanases 11 178 IPR036908 -
Apr10g0850 254 Gene3D - 160 254 IPR036749 -
Apr10g0850 254 Pfam Lytic transglycolase 65 149 IPR009009 -
Apr10g0850 254 PANTHER EXPANSIN 7 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0850 Apr-Chr10 20836906 20838269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0850 1 250 Expansin Gene Family AT2G40610 63.745 4.11e-117 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0850 - K20628 csin:114285277 362.073