Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0848 ATGAGTTGTGGTGAAACGGAAAGAGGAGGGGAAGAGAAGGAATATGAGGAGAACAGTTCTGTGGGATTGGAATCAAAATCAGTGAGGCAAAGCAACGGTTCAATTGAAAATCAGCAGCTAACAATTGATGAGAATCTTCTGGTTGACCCCAAACTACTGTTTATTGGGACAAAGATTGGAGAAGGAGCTCATGGGAGGGTTTATGAAGGAAGGTATAGAGATCGGATTGTTGCGATTAAAGTTCTAAATCGCGGGAGCACTTCAGAAGAGAGAGTTTCCCTTGAAAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTTAAGTTTATTGGAGCTTGTAAGGATCCCCTGATGGCGATTGTTACAGAGCTGTTGCCTGGCATGTCGCTGCGAAAATATTTGATTGCCATACGCCCTAAACAACTAGACCTTTATGTGGCTATAAACTTTGCCCTTGACATTGCTCGAGCTATGGATTGGCTGCATGCCAATGGAATCATACATAGAGATCTGAAGCCTGACAATCTTCTGCTTACAGAAAATCAGAAATCAGTTAAACTTGCTGATTTTGGCCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACTGCAGAAACTGGAACTTACCGTTGGATGGCACCAGAGTTGTACAGTACTGTGACATTGCGTCAAGGGGAGAAAAAGCATTACAACAACAAGGTTGATGTCTATAGCTTTGGAATTGTTTTGTGGGAGCTACTAACTAATCGCATGCCTTTCGAAGGGATGTCCAATTTACAAGCTGCTTATGCTGCTGCCTTTAAGGTACAAAATTTGAGGCCTAACCTTCCTGATGATATATCTCCTGATCTTGCCTTTATCATACAATCATGTTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATCCGCATGCTCAATGCGTTTCTCTTCACACTCGAACAACCGTCCCCTTCGTTGCCGGAACCTGACAATGAACCTGAAGTCGCCACAAGTAACGGTACCATAACTGACTTTTCTACCCGAAATAAAGGAAAGTTTGCTTTTCTTCGCCATTTGTTTTCTTCGAAGAGAACCAAAAGCTAA 1116 0.4256 MSCGETERGGEEKEYEENSSVGLESKSVRQSNGSIENQQLTIDENLLVDPKLLFIGTKIGEGAHGRVYEGRYRDRIVAIKVLNRGSTSEERVSLENRFAREVNMMSRVHHENLVKFIGACKDPLMAIVTELLPGMSLRKYLIAIRPKQLDLYVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTENQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKVQNLRPNLPDDISPDLAFIIQSCWVEDPNMRPSFSQIIRMLNAFLFTLEQPSPSLPEPDNEPEVATSNGTITDFSTRNKGKFAFLRHLFSSKRTKS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0848 371 Gene3D Transferase(Phosphotransferase) domain 1 136 343 - -
Apr10g0848 371 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 24 346 - -
Apr10g0848 371 ProSiteProfiles Protein kinase domain profile. 53 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g0848 371 SMART serkin_6 53 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g0848 371 MobiDBLite consensus disorder prediction 1 32 - -
Apr10g0848 371 PRINTS Tyrosine kinase catalytic domain signature 129 142 IPR001245 GO:0004672|GO:0006468
Apr10g0848 371 PRINTS Tyrosine kinase catalytic domain signature 167 185 IPR001245 GO:0004672|GO:0006468
Apr10g0848 371 PRINTS Tyrosine kinase catalytic domain signature 241 263 IPR001245 GO:0004672|GO:0006468
Apr10g0848 371 PRINTS Tyrosine kinase catalytic domain signature 287 309 IPR001245 GO:0004672|GO:0006468
Apr10g0848 371 MobiDBLite consensus disorder prediction 1 20 - -
Apr10g0848 371 PANTHER SERINE-THREONINE PROTEIN KINASE 24 346 - -
Apr10g0848 371 Gene3D Phosphorylase Kinase; domain 1 41 132 - -
Apr10g0848 371 CDD STKc_MAP3K-like 59 316 - -
Apr10g0848 371 Pfam Protein tyrosine and serine/threonine kinase 55 316 IPR001245 GO:0004672|GO:0006468
Apr10g0848 371 MobiDBLite consensus disorder prediction 327 347 - -
Apr10g0848 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Apr10g0848 371 ProSitePatterns Protein kinases ATP-binding region signature. 59 80 IPR017441 GO:0005524
Apr10g0848 371 SUPERFAMILY Protein kinase-like (PK-like) 50 341 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0848 Apr-Chr10 20811017 20815865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0848 41 368 MAP Kinase Kinase Kinase AT5G01850 73.088 1.25e-179 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Apr10g0848 PK_Tyr_Ser-Thr 5.6e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0848 - - gmx:100816708 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0848 10 20811017 20815865 Apr10g0848 10 20811017 20815865 ECH