Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0844 ATGGCGATTTCTCCTCAAACATTCTCAACCGGAAAACGACGACCATCAGGGGGGTCGTTTATCTCTCCGAAACTCACCGACGTCAACCTTCTTCACTCTTTGCTTCACCTTACGCACCGGATATGTTCTTTCAACCTCACCCACACCACACACTTGCTCCTCAGCCGCACTTCCTCCTCCACCATCCGCAAAACGCAGCTCCTCGGTGTCGTTTTCGAAGACCTGTTTCGATTTTCGAATTCCAATTCGATTTCGACTTCGACTTCGACTTCGACTTCAGCTTCAACCTCTCTCTGCTCTCACTCTCTCTTCCTTTGCCTCGAGGAAATGTACATCTTGCTGCACAGGATCAAAACCCTAATTGAAGATTGCTCCAACGGAAGCAAATTCAGCTTACTCATGCAAATCGAAACCATCGCCGACACCTTTCACAAGCTCAACGGAGAACTATCCACGCTTCTCGATATCTTCCCTCTCCAAGAGCTCGACCTAAACGAAGACGTTCGCGAACTGGTTCTCCTAATCAGAAAACAGTGCTCCGAATCCAAGCCGTCCATCGGCAAGGAACAAACCGATCTAAGAAACGACGTCGTTTCGGTTCTCGACCGGATCAAGGACGAGATTGTTCCCGATCAGGCACACCTTTCTTCGATCTTCGAGAAACTGGAGATTCGCGATGCTTCCAGTTGCAGAGCGGAGATTAAGAACCTGGAGGAAGAGATTCACAATCGGAGCGAAGAGCATTCGAAAGCGGATATCGTCGCGTTGATCGGCCTCGTTCGTTACGCCAAGTGCGTTCTCTTCGGCGCATCCACTCCCTCACCGCGAAACGAGACTCTCAGGCGGAATCAGTCGTCGGAGTTAGCGGTTCCGGCGGATTACCGGTGCCCGATAAGCCTAGAACTGATGCGAGACCCTGTCGTGGTGGCAACGGGACAAACGTACGATCGTGCATCAATCAAGCTCTGGATGGATTCTGGACATAACACATGTCCCAAAACTGGTCAAACATTATCGCACACCGACCTTATCCCCAATCGTGCTCTAAGGAACATGATAGCAATGTGGTGCCGTGAGCAGAGAATCCCCTTCGAAGCAGAAACAGTTACCGGAAAACTCAACGGCGGCGTAACTAACAAGGCTGCGTTAGAAGCCACGCGAATGACGGTGTCGTTTTTGGTCAACAAGCTCAAAGTTCCTTTGCCTCTTGATCAGTCCATGGGAGACACGATCGGTGTCGTTTACGAGCTTCGGGTTCTGGCGAAAACAGATTCGGATAGCCGAGCCTGTATCGCGGAAGCTGGAGCCATCCCGCTTTTGGTTCGGTTCCTCAGCTTCGACGTGGGCATTCACAGCCCAAGCCTCCAGGTTAACGCCGTCACGACGATTTTGAACCTCTCGATTCTCGAAGCGAACAAGACGAGGATAATGGAGACTGACGGCGCGTTAAACGGCGTTGCGGAGGTCTTACGTTCGGGTGCCACATGGGAGGCGAAAGCCAACGCGGCGGCTGCGGTTTTCAGTTTATCGGGTGTGCCAGCGTACAGGAAAAGGCTCGGGAGGAAAACACGTGTCGTGAGCGGGTTGGTTGATTTGGCGAGGGGTGGGCCCGAGGGGGCGAAGAAGGACGCGTTGGCGGCGATACTGAACCTTGCGGCGGATAGAGAAACGGTGGCGAGGTTGGTGGAGGGAGGTGCGGTGCAGATGACGGCGGAGGTGATGGCGGCGATGCCGGAGGAGGCGGTGACGATTCTGGAGGCGGTGGTGAAGAGGGGAGGGTTGGTGGCGGTGGCGGCGGCTTACGGGAGCATAAAGAAGTTGGGAACGGTGTTGAGGGAGGGGTCGGAGAGGGCGAGGGAGAGCGCTGCGGCGACGCTGGTGACGATGTGTCGGAAGGGGGGTTCGGAGATTGTGGCAGAGCTGGCGGCGATTCCCGGCGTGGAGAGGGTGATTTGGGAGTTGATGGCGGTGGGAAGTGTGAGAGGGAGGAGGAAGGCGGCGACGCTGTTGAGGATTTTGCGGCGGTGGGCGGCGGGGTTGGACGGCGGAGACACTGAAGGGTTCTCAACTACCATGGTCAATTCCTCAACTACTGTGGTTGTTCCAACTTCCACTTCTTTAGCACAGTAA 2130 0.5469 MAISPQTFSTGKRRPSGGSFISPKLTDVNLLHSLLHLTHRICSFNLTHTTHLLLSRTSSSTIRKTQLLGVVFEDLFRFSNSNSISTSTSTSTSASTSLCSHSLFLCLEEMYILLHRIKTLIEDCSNGSKFSLLMQIETIADTFHKLNGELSTLLDIFPLQELDLNEDVRELVLLIRKQCSESKPSIGKEQTDLRNDVVSVLDRIKDEIVPDQAHLSSIFEKLEIRDASSCRAEIKNLEEEIHNRSEEHSKADIVALIGLVRYAKCVLFGASTPSPRNETLRRNQSSELAVPADYRCPISLELMRDPVVVATGQTYDRASIKLWMDSGHNTCPKTGQTLSHTDLIPNRALRNMIAMWCREQRIPFEAETVTGKLNGGVTNKAALEATRMTVSFLVNKLKVPLPLDQSMGDTIGVVYELRVLAKTDSDSRACIAEAGAIPLLVRFLSFDVGIHSPSLQVNAVTTILNLSILEANKTRIMETDGALNGVAEVLRSGATWEAKANAAAAVFSLSGVPAYRKRLGRKTRVVSGLVDLARGGPEGAKKDALAAILNLAADRETVARLVEGGAVQMTAEVMAAMPEEAVTILEAVVKRGGLVAVAAAYGSIKKLGTVLREGSERARESAAATLVTMCRKGGSEIVAELAAIPGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGDTEGFSTTMVNSSTTVVVPTSTSLAQ* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0844 709 Pfam Armadillo/beta-catenin-like repeat 425 467 IPR000225 GO:0005515
Apr10g0844 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 481 IPR000225 GO:0005515
Apr10g0844 709 CDD RING-Ubox_PUB 294 336 IPR045210 -
Apr10g0844 709 Pfam U-box domain 290 361 IPR003613 GO:0004842|GO:0016567
Apr10g0844 709 PANTHER U BOX DOMAIN-CONTAINING 13 688 - -
Apr10g0844 709 SUPERFAMILY ARM repeat 406 673 IPR016024 -
Apr10g0844 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 368 IPR013083 -
Apr10g0844 709 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 13 688 - -
Apr10g0844 709 SMART arm_5 513 553 IPR000225 GO:0005515
Apr10g0844 709 SMART arm_5 424 468 IPR000225 GO:0005515
Apr10g0844 709 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Apr10g0844 709 Coils Coil 227 247 - -
Apr10g0844 709 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Apr10g0844 709 SUPERFAMILY RING/U-box 286 363 - -
Apr10g0844 709 Gene3D - 404 598 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0844 Apr-Chr10 20743784 20747004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0844 12 707 U-box Gene Family AT5G01830 55.000 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0844 - - cam:101506886 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0844 10 20743784 20747004 Apr10g0844 10 20743784 20747004 ECH