Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0823 ATGGATTCTAGGCGGCGTAAAAAAGCAGCTATGCAACACAAATTGCAACAACTTCGATCAGTCACGAATTCTAGTGCTGTGAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAAGAGCTGAAGCAAAAAGTGGAGGGATTCAGCTCAGAGCTTGGAATCGCTGAATCATCATCCTCCCATGACGAATTGCCCATGGTCACCGTAGAAACCCTAGAAAGGGGTTTCCTCATTAATGTGTTTTCAGAAAGAAATTGCCCCGGTATGCTTGTGGCAATACTTGACGCCTTCGAAGAACTGGGACTTGATGTGCTTGACGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTTGGAGGAGAAAGTCAAGAGAACGAGAGCATCGACGCGCAAGTGGTGAAGCAAGCAGTGCTGCAAGCAATCAAAAACATGGAATAA 450 0.4556 MDSRRRKKAAMQHKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVEGFSSELGIAESSSSHDELPMVTVETLERGFLINVFSERNCPGMLVAILDAFEELGLDVLDARVSCEDTFQLEAVGGESQENESIDAQVVKQAVLQAIKNME* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0823 149 ProSiteProfiles ACT domain profile. 80 149 IPR002912 -
Apr10g0823 149 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 59 IPR036638 GO:0046983
Apr10g0823 149 CDD ACT_UUR-ACR-like 89 145 - -
Apr10g0823 149 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 148 - -
Apr10g0823 149 Gene3D - 2 64 IPR036638 GO:0046983
Apr10g0823 149 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0823 Apr-Chr10 20423980 20425370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0823 3 60 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 38.983 3.84e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0823 - - gmx:100499821 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0823 10 20423980 20425370 Apr10g0823 10 20423980 20425370 ECH
Apr10g0823 10 20423980 20425370 Apr9g1474 9 24314397 24315859 ECH
Apr10g0823 10 20423980 20425370 Apr10g2165 10 34169066 34170481 ECH
Apr4g2116 4 30169893 30172058 Apr10g0823 10 20423980 20425370 ECH