Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0820 ATGCATACAGAGGTTGTCTTTAGAAGATATTTGCTACCAGCAGAAAAGGTTTATCTATCATTGTCATTTGTTTATAATTACAAGGCATGGGATCATGGCTCACAAATACTTGTTTGCAAGCCTATATATATGTTTCTTCAAAATGTTCATCCTTTACATACAACATTAGAGTTAACTTTAGAAACAACTCTTGGTAAGGACTTGACATATTTAAATTCTAGAGACTTGTCATTGTATTGGCCAAGCTTAAATGTGAAGTTAGAACGTGTAAATATGCAACCAAGGACAAGTGCTGGAGATGCTTTCCGTGTAAGTGCATCAAGTACACCTAGCAATTTAAGTAGAGGATCTGACCCAGATGACAACGAATCACGAGGTGATGTTTACATATGGGGAGAAGTTTTGACAGATGGGGTATCATCTAATTGGAGTGGAACTCAAGTCCCTTTTAAGTCAGATGTGTTGATTCCTAAGCTTTTGGACTCAAAAGTTGTTCTTGATGTTTGCCAAATTGCATCTGGTGGATGCCACATTGCTATGATTACAAGGCAAGGAGATGTTTTTACCTGGGGAGAAGAATCAGGGGGAAGACTTGGCCATGGAATTGATAAAGATTTTCGCCATCCTCACCTTGTTAAGTTTGAGGAAGATACAAAGTTGGAGTTTGTTGCATGTGGAGAGTATCATACTTGTGTTGTATCTCAATCTTATGAACTTCTCACATGGGGTGATGGCACATATAATGTTGGACTTCTTGGGCATGGTAATGAGTGCAGCCATTGGATACCAAAAAAGGTTAATGGCCTTTTAGGACTTGAAGTTGTATCTGTTGCATGTGGCACATGGCATTCAGCATTGGCAACATCAAATGGAAAACTTTTCACTTTTGGTGATGGAGCTTTTGGTGTCTTGGGCCATGGAGATAGAGAGAGCGTGTTATATCCAAAGGAGGTACAATTATTAAGTGGCCTAAAAACTATAAAGGTTGCATGTGGAGTTTGGCACACTGCTGCTATTATAGAAGTTACATTTCAATCTGGTTCAACTGCTTCACCATGGAAGCTCTTCACATGGGGTGATGGTGACAAATATCGTTTAGGTCATGGAAATAAGGAAACATACCTTCAACCTACTCGTGTGTCTCCACTTATGGAATATAATTTCCAACAAGTAGCTTGTGGGCATACCATGACTATTGCTCTCACTACATCTGGTCATGTCTTTACAATGGGAGGAACTGAAAATGGTCAATTAGGAAATCCAACATCTCTTGGAAAAATACCAACACTAATTCAAGATAAGTTGCTTGGTGAGTATGTTGAGCAAATATCATGTGGAGCACATCATGTTGTTGTTTTAACTTCAAGAAGTGAACTATATACGTGGGGAATGGGTGCCAATGGCAGGTTAGGACACGGAGACACAGAAGATAAGAATACTCCTACATTGGTCACGACCTTGAAAGATAAGCATATAAAAAATATATCATGTGGCTCAAACTTCACATCTTGTATTTGTGTCCATAAATTGGTCTCTGGAACTGACCAATCAACTTGTTTTAGTTGTCAACAAGCATTTGGCTTAACAAGGATAAGGCACAGTTGTCATAATTGCGGATTGGTTTTCTGTCATACTTGTAGTTCTAAAAAGGCATTGAAAGCAGCATTGAGTCCAACTCCAGAAAAACCTCATCGTGTATGTGATAATTGTTATGTTAAGCTTAAAGATGTTGGGGATGGTGGTGCTTCCAAGTTTAATACAAAGGAAAGTCTTTATTCTTCAATAAATGGAAAAGAAATTTTAGTCCAAGGAACATCAAGGTCAACAAGAAATCTTTTTTCTCCCTCCATTGAACCAATTAAATACCTTGAGATCAAGAGTAGTAAGCCTACAAGCAAAGATGATTCTACTTCCTTCGTACAAGCTCCTAAAGTTTCATCTCTTTCACAGTTAAATCCAAGTTCATTAAGTTATACTCAAAGTGTTTTGAAGCCTAATATAACTCTTACTCCATCAGAAACTTCACCACCTCCACGATCTCTTGCCAACTATAGGCCCGCATACACAAGTAGACAATGTCCTCCACGTCCTGCCAACCCTAGATTTTCTGGAAGTCTTATCGATAATTTGAGAAGGAAAAATGAGCTTTTGAACCAAGAAGTTTCAAAGTTGCAAAAACAAATTCAAAGTTTGAAGAATAAGAGTGACATAAAAGATGTGGATATTCAAAAGCTTCAAAAAAAGGCTACAGAAGCTATTGCCTTGGCTGCAGTGGAATCTTCTAATCATAGAATAACAAAGGAATTTGTTGGATCTAGTATATATCAGTTAAAAGAAATGACTATGAATCTATCACAAGAAACACCAGAAAGTAAAGATTTGAGAACTATGATTGCTCGAGTTGAAGATTTTCTTAAAGATATTTCAGAAATTGAAGCACCTTCCATGCCTTCAAAGTTGGAGTCCCAAAAACAAAATGTGGTTGATATACCTACTTCAAATATTGACTTTTCTAAACTACAAAGACAAAAACTAGAACAAAATATTGATGTTGCAAGGGTTCATCCATGTGAAGATGGAGGAAATGTCCTAGAAGAAAGTACAAAGTTGGAATCTAAGCAACAAAATACACTTGATATATTTGCCTTGGATACCAACACTTTTGAACTACAAGAACACAAATCAAAACAAAATGTTGATGCCACAAAAGTTGATCCAAGTCAAGATGGAGAAGATTTCCTTGAAGAAAATAATGGATCAAAGTTGCAATTTGAGCAACAAAATACACTTGATATACCTTCATTAGATGCTAGTGCTTTTAAAGTGCAGGAACACAGACCAGAAGAAAGTGTCAATGCTGTAGAAGATGATTCATGTAAAGATAGAGAAAATTTCCTAGAAGAAAGTAATGGTTCAATGTTAAAGTCTGAGAAACAAAATGAAACTAATGAGCATGTTGTAATTAATGACATTGCTAAACTACAAGAGCATAAATTAGAAGAAAATGTTGATGCTACAATAGCCCTTCAACAATATAATGGATCATCTGTATCTAGTGTTGGAGAAACAATACCTCCACAAAACTTAGAAAATGGTTCAAGATCATTAGACTCAATGCTGAGAAAACAAGGAGAAATACAAGTTATTGAAAAATTTGAGCATGGTGTTTATGTGACGCTTATGCTGCAACCAGATGGCATCAAAATTTTTAAACAAGTTAAATTCAGTAAACGAAGATTTACAAGAAATCAAGCAGAAGAATGGTGGAATCAAAACAAGATTAGAGTTCTTAAAAAATATTGTCCAACACATCAAAAGCTAACAACTGGATCATGTAATGACACATCACTTGTTAAAGAAAATATTGAGATATCAACTTCTAAAACTTAA 3390 0.3611 MHTEVVFRRYLLPAEKVYLSLSFVYNYKAWDHGSQILVCKPIYMFLQNVHPLHTTLELTLETTLGKDLTYLNSRDLSLYWPSLNVKLERVNMQPRTSAGDAFRVSASSTPSNLSRGSDPDDNESRGDVYIWGEVLTDGVSSNWSGTQVPFKSDVLIPKLLDSKVVLDVCQIASGGCHIAMITRQGDVFTWGEESGGRLGHGIDKDFRHPHLVKFEEDTKLEFVACGEYHTCVVSQSYELLTWGDGTYNVGLLGHGNECSHWIPKKVNGLLGLEVVSVACGTWHSALATSNGKLFTFGDGAFGVLGHGDRESVLYPKEVQLLSGLKTIKVACGVWHTAAIIEVTFQSGSTASPWKLFTWGDGDKYRLGHGNKETYLQPTRVSPLMEYNFQQVACGHTMTIALTTSGHVFTMGGTENGQLGNPTSLGKIPTLIQDKLLGEYVEQISCGAHHVVVLTSRSELYTWGMGANGRLGHGDTEDKNTPTLVTTLKDKHIKNISCGSNFTSCICVHKLVSGTDQSTCFSCQQAFGLTRIRHSCHNCGLVFCHTCSSKKALKAALSPTPEKPHRVCDNCYVKLKDVGDGGASKFNTKESLYSSINGKEILVQGTSRSTRNLFSPSIEPIKYLEIKSSKPTSKDDSTSFVQAPKVSSLSQLNPSSLSYTQSVLKPNITLTPSETSPPPRSLANYRPAYTSRQCPPRPANPRFSGSLIDNLRRKNELLNQEVSKLQKQIQSLKNKSDIKDVDIQKLQKKATEAIALAAVESSNHRITKEFVGSSIYQLKEMTMNLSQETPESKDLRTMIARVEDFLKDISEIEAPSMPSKLESQKQNVVDIPTSNIDFSKLQRQKLEQNIDVARVHPCEDGGNVLEESTKLESKQQNTLDIFALDTNTFELQEHKSKQNVDATKVDPSQDGEDFLEENNGSKLQFEQQNTLDIPSLDASAFKVQEHRPEESVNAVEDDSCKDRENFLEESNGSMLKSEKQNETNEHVVINDIAKLQEHKLEENVDATIALQQYNGSSVSSVGETIPPQNLENGSRSLDSMLRKQGEIQVIEKFEHGVYVTLMLQPDGIKIFKQVKFSKRRFTRNQAEEWWNQNKIRVLKKYCPTHQKLTTGSCNDTSLVKENIEISTSKT* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0820 1129 CDD FYVE_like_SF 518 571 - -
Apr10g0820 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 185 236 IPR000408 -
Apr10g0820 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 237 290 IPR000408 -
Apr10g0820 1129 Gene3D - 349 522 IPR009091 -
Apr10g0820 1129 Gene3D - 120 348 IPR009091 -
Apr10g0820 1129 Coils Coil 707 748 - -
Apr10g0820 1129 Pfam FYVE zinc finger 514 575 IPR000306 GO:0046872
Apr10g0820 1129 SUPERFAMILY FYVE/PHD zinc finger 511 577 IPR011011 -
Apr10g0820 1129 Pfam Transcription factor regulating root and shoot growth via Pin3 1047 1100 IPR013591 -
Apr10g0820 1129 MobiDBLite consensus disorder prediction 98 117 - -
Apr10g0820 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 291 342 IPR000408 -
Apr10g0820 1129 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 92 1107 - -
Apr10g0820 1129 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 171 181 IPR000408 -
Apr10g0820 1129 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 329 339 IPR000408 -
Apr10g0820 1129 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 513 575 IPR017455 -
Apr10g0820 1129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 523 580 IPR013083 -
Apr10g0820 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 353 404 IPR000408 -
Apr10g0820 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 457 508 IPR000408 -
Apr10g0820 1129 PRINTS Chromosome condensation regulator RCC1 signature 168 181 IPR000408 -
Apr10g0820 1129 PRINTS Chromosome condensation regulator RCC1 signature 187 203 IPR000408 -
Apr10g0820 1129 PRINTS Chromosome condensation regulator RCC1 signature 237 253 IPR000408 -
Apr10g0820 1129 PRINTS Chromosome condensation regulator RCC1 signature 277 293 IPR000408 -
Apr10g0820 1129 PRINTS Chromosome condensation regulator RCC1 signature 293 307 IPR000408 -
Apr10g0820 1129 PRINTS Chromosome condensation regulator RCC1 signature 394 412 IPR000408 -
Apr10g0820 1129 PRINTS Chromosome condensation regulator RCC1 signature 452 473 IPR000408 -
Apr10g0820 1129 ProSiteProfiles BRX domain profile. 1046 1101 IPR013591 -
Apr10g0820 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 239 286 IPR000408 -
Apr10g0820 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 355 401 IPR000408 -
Apr10g0820 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 458 505 IPR000408 -
Apr10g0820 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 290 339 IPR000408 -
Apr10g0820 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 185 233 IPR000408 -
Apr10g0820 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 404 453 IPR000408 -
Apr10g0820 1129 MobiDBLite consensus disorder prediction 98 124 - -
Apr10g0820 1129 SMART fyve_4 507 576 IPR000306 GO:0046872
Apr10g0820 1129 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 92 1107 - -
Apr10g0820 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Apr10g0820 1129 SUPERFAMILY RCC1/BLIP-II 125 509 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0820 Apr-Chr10 20338912 20344876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0820 1045 1100 Major Intrinsic Protein MIP AT1G31880 37.500 3.54e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0820 - - gmx:100798841 1219.91