Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0810 ATGTCTTTCAGTTTCACTAACCTCCTTAACAACAACAACAACAACAACAACACTAACATGACCATGGATGATCATAATTTTGCTAACTTCAAGTCTCCTTCATCAATTTACCCTTCTTATTCTGATTTTCCACCTGGTTTTAGCCCAACTGAGTTGTTGAATTCACCTTTGTTTATTTCTTCTCCATATAATCATGCTTCTTATACAACTGAGTCTTCTGAGAGCTTGAATAGGAGAAACAGTTCAACTGAGGACCAACTAGGTAACAAGGAGGAAGAAAGAGACTACTTTGACCTCTCTTTCCAAACACAAACAAAGCATGTGCCTCTCTTTCAATCTTCAACAAGCATGTTCCAAGTGCAAGATCCAGTAACGAAACATGACACATTGATATTCAATGAAACTGCAAAGCAAACTGAATTTTCACCTGAGAGGACAGCAACAAAATCTGAATATCCATCCACTAAGGGCATCTCCTCAGAAATGGCCACAACCAAACTTGAAATACAAAGCAATTCTGCTTCAGGATCTGGCTATTTTAACTACACTAATAATGCTTCAAAGTCTGTTAGAGAACAAAGCAGATCAGAAGATGGGTACAATTGGAGGAAATATGGAGAGAAGCAAGTGAAAGGAAGTGAAAATCCAAGAAGTTATTACAAGTGCACACACCCAAGTTGCCCAACAAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACATATAACTGAAATAGTATATAAGGGAAGTCACAACCATCCCAAGCCTCAATCTACAAGAAAAACAAGTTCTCAATCACTTCATCAAACTTCTTCATCCTGCAACAACTCAGGGATTTCTGATCAATCTATGGGAGAGGAGGATTTTGAGCAAACATCACAAAATTGTTATTCGGGAGGGGATGATGATGACCTTGGACAAGAGGCCAAAAGATGGAAGGGAGAGAATGAAAATGATGGTTATTCCTATTCCACTTCTGGGAGTAGAACTGTTAAGGAACCCAGAGTCGTGGTTCAAACTACTAGTGAAATTGATATACTTGATGATGGATATAGGTGGAGAAAATATGGACAGAAAGTAGTTAAAGGAAACCCAAACCCAAGGAGCTACTACAAATGTGTAACCCCAGGTTGTCCAGTGAGAAAACATGTTGAAAGAGCAGCACATGACATGAAAGCTGTGATCACAACTTATGAAGGAAAACACAACCATGATGTGCCTGTAGGAAGAGGAAATGCAAGCTATAGCATGAACAAAACATCTCTCAACAACGTCACTATCCCTGCCCCTATAAGGCCTTCAGCAGTGACTAATTATTCTAACTCATCAAGTTTCGCAAACTCACTTCATGACATAAAGCTACCACCGACAACTTGTGCAAGTCAAGAACCTTTCCCAATGGACTTGCTCATGAGCCCTACAAGTCTTGGATTTTCAACTTTGGACAAATCAATGAGTTCCTTCGCCAATCCTGAACAATTCTCAGATGCTGCATATTTGGCTAAGGATAATAATGACTCATTCCTTCAGTCTTTTTTGTCAAAGAACTTTTGA 1551 0.3926 MSFSFTNLLNNNNNNNNTNMTMDDHNFANFKSPSSIYPSYSDFPPGFSPTELLNSPLFISSPYNHASYTTESSESLNRRNSSTEDQLGNKEEERDYFDLSFQTQTKHVPLFQSSTSMFQVQDPVTKHDTLIFNETAKQTEFSPERTATKSEYPSTKGISSEMATTKLEIQSNSASGSGYFNYTNNASKSVREQSRSEDGYNWRKYGEKQVKGSENPRSYYKCTHPSCPTKKKVERSLEGHITEIVYKGSHNHPKPQSTRKTSSQSLHQTSSSCNNSGISDQSMGEEDFEQTSQNCYSGGDDDDLGQEAKRWKGENENDGYSYSTSGSRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVTPGCPVRKHVERAAHDMKAVITTYEGKHNHDVPVGRGNASYSMNKTSLNNVTIPAPIRPSAVTNYSNSSSFANSLHDIKLPPTTCASQEPFPMDLLMSPTSLGFSTLDKSMSSFANPEQFSDAAYLAKDNNDSFLQSFLSKNF* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0810 516 Coils Coil 73 93 - -
Apr10g0810 516 MobiDBLite consensus disorder prediction 302 316 - -
Apr10g0810 516 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 30 505 - -
Apr10g0810 516 MobiDBLite consensus disorder prediction 69 83 - -
Apr10g0810 516 SMART WRKY_cls 346 405 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g0810 516 SMART WRKY_cls 196 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g0810 516 MobiDBLite consensus disorder prediction 245 332 - -
Apr10g0810 516 Gene3D WRKY domain 333 399 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr10g0810 516 MobiDBLite consensus disorder prediction 69 91 - -
Apr10g0810 516 MobiDBLite consensus disorder prediction 251 299 - -
Apr10g0810 516 Gene3D WRKY domain 182 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr10g0810 516 Pfam WRKY DNA -binding domain 197 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g0810 516 Pfam WRKY DNA -binding domain 347 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g0810 516 SUPERFAMILY WRKY DNA-binding domain 338 406 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr10g0810 516 MobiDBLite consensus disorder prediction 317 332 - -
Apr10g0810 516 ProSiteProfiles WRKY domain profile. 341 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g0810 516 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 30 505 IPR044810 GO:0003700
Apr10g0810 516 ProSiteProfiles WRKY domain profile. 191 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g0810 516 SUPERFAMILY WRKY DNA-binding domain 192 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0810 Apr-Chr10 20113918 20117853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0810 191 469 WRKY Transcription Factor Family AT2G38470 55.305 6.80e-107 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr10g0810 WRKY 1.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0810 K13424 - gmx:100127367 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0810 10 20113918 20117853 Apr10g0810 10 20113918 20117853 ECH
Apr4g2100 4 29888774 29893228 Apr10g0810 10 20113918 20117853 PCT