Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0795 ATGTATAGTTTTAAATTACATTCTGCAACTGCAAGATTGCAGTTTGTAAGGTCTTCACAACCAAATTGTGCCAGCAATTGCAGACCTACAATATTAGGGTTTGGAAGGTCTTCACAACCACAGAGTGCCCGCAATTGCTTCCCTATATGCGTGCAATTTTCCACAAATTCAACAATTGCAACACAATTGCAACCACAACCAGAACCAAAATTTAAAGCAACGGTCTATGATGTTTTTGTTAGCTTTAGAGGCAAGGACATACGTCAAGGTTTTCTTAGCCATTTGATTGAGGCTTTTCCTAGAAAGCAATTACATGCCTTTGTAGATGATAAGCTTGAAAGAGGAGATGAAATATCATCATCACTTCTTGGAGCAATTGAAAGATCATCCATTTCTCTAATCATATTTTCAAAGGACTATGCTTCTTCGAGGTGGTGTTTGGAAGAACTTGAAAAAATTGTTGAGTGTAAAGAGAAATATGGACAAGTTGTAATACCTGTCTTTTACAATGTAGATCCCACAAATGTGAGACATCAAACAGGGAGTTATGAAAATGCACTTGTTGAACAGGAAAAATATTATAATTCAACCAAGGTGAATATTTGGAGAAGTGCTTTGAACAAATCTGCTAACTTATCAGGAATTAATTCATCAGCTTTTCGGAATGATGCCGAGCTACTTCAAGAAATTGTCAAAACCATTGATCTTCAACTGATAAGGATGGGTAAGCACCCAGTGCACTCCAAAGGACTTATAGGAATTGACAAAACTATTGTACATTTAGAATCATTGTTACGTGAAGAATCAAAACATGTTCGTGTGATTGGAATTTGGGGTATGGGTGGTATAGGTAAAACAACCATTGCAGAAGAAATCTTTAACAGAACAAATTTTGAATATGAAGGTTGTTGTTTTTTGGCAAATGTAAGGGAAGAAATAGAAAGACATGGAATAACTTCTGTGAAGACAAAACTTTTTGCTACACTCTTAACAAGTGATGTGAAAATTGACACGGCAAATGCATTGCCCACTTATGTCGAGAGAAGGATTGGTCGTAAGAAGGTTCTTATTGTTCTTGATGATTTGAATGATTCAGATCAACTAGAAAAAATAATTGGAAATTATGATCAATTTGGATCAGGTAGTAGAATCATTGTAACAACTAGAGATAAACAAGTGCTAATTGCTAACAATGTTGATGATGTATATGAGGTTAGGGTATTGAGCAACAATGATGCACTTGATCTTTTCAAATTGAAAGCCTTTAACCAAAATCATCTTGGAGTGGAGTATTATGAACTATCAAAGAGGGTGGTCAATTATGCCAAAGGCATTCCTCTAGTTCTCAAAGTTTTGGGTCATCTTCTTCGCGGAAAAGATAAGGAAGTTTGGGAAAGTCAGCTAGACAAACTTAAAAGAATTCCAAGTAAGAAAGTTCACAGTGTAATGAGATTGAGTTATGATGACTTAGATCGCGAAGAGCAAAAGATTCTTTTAGATATTGCATGTTTCTTCAGTGTAGTCAATTTGAAAGTGGACTTCATAAAAAGTTTACTAAAAGATTGTGAAAGTGATAATTCAGTGACTGCTGGGTTAGAAAGACTCAAAGACAAAGCTCTTATAACTATTTCTGAAGATAGTGTGGTATCTATGCATGATATTATCCGAGAAATGGCATGGGAAATTGTTCGCCATGAATCTAGTGATGGCCTAGGAAATCACAGTCGATTGTGGGATCCTAATGAGATTGGTGATGTTTTAAAAAATGACAAGGGCAGCGAGGTCAATAGAAGCATAACAACGCGATTGTCAACATTGAAGAACCTGAATTTAAGACCTCATGTTTTTGCTAAGATGTGCAAACTCCTATTTTTGGATTTTCATGATGAAAAATTTTTGGATTTTCATAGAACCGATAATGCACCCTCCAGGGATCTTTTTCCACAAGGGCTTCAATCTTTGCCAAATCAACTAAGATATCTCCGTTGGATATGTTATCCTTTGAAATCCTTGCCTGAGCAATTTTCTGCTGAGAAACTTGCTATCTTAAACTTGTCACATAGCCATGTGGAAAAACTTTGGCATGGAGTGAAAAATCTGGTGAATTTAAAAGAAGTTAAACTTCATGGTTGTGAGTTCCTCCAAGAGCTTCCAGACTTTTCAAAAGCTATAAATCTAGAATTACTGGATATCAGTGGTTGTTATCAGCTGAGTAGCGTGCATCCATCTGTTTTGTCTCTGGACAAGCTTGAGAAATTGAAAATATTCAACTGCACTTCCCTTACCAAACTTTCTGGTGACACTCATTTAAGCTCCCTCAGTTGTCTCAGTCTTCGCTACTGCAAAAACCTGCAAGAATTCTCAGTGACATCAGAGAATATGAATTTACTAGATTTATCATGGACTCGCGTCAATTCATTGCCCTCGTCTTTTGGACGTCAAAGCAAGCTTGAAATTCTTGTTATAGAAGGCAGTGGCATTAAGAGCTTGCCTTCATCCATTGAGAATCTCACAAGACTGCACTATCTTGATGCACGTAGTTGTTTCAAGCTTCAAATTCTGCCAGAGCTTCCACCATCCCTTGAAACTATAAATGCTTGTAATTGCATATCACTAAAGACTGTATTGTTCCCTTCAACATCTGCTAAACAGTTCAAGGAAAACAGGAAAAGTGTTCTGTTCTGCAATTGCTTGAAATTGGATGAACAGTCTCTCACAGCAATTGGGTTAAACGCGCAAATCAACTTGATGAAATTTGCATACCAACACTTCTCTGTCTTAGATAATGATCACATAAAAAATTATGGCTTTTACAATCATAGTTATCATTACTATCAGGCTGTGTACATGTATCCAGGAAGCAGGATTCCAGAGTGGTTGGTGTACAAGACAATGGAGAAGGATCATGTAATTGTTGATCTTTCTTCTGCTTCACCTTCTCCACTGTTGGGCTTCATTTTCTGCTTCATCATTGACGAGGACTTAGACATAAAGGATCATACATTGAAGCTTAACATCAATATTAGTGATGAGAATGAAGGTAACAAGGGCAGTATTGAAATATACACTTCTCTGCCATTGAGGACGATCACATCGGATCATGTGTGTGCGTTGTATGACCGAAGATGTTCTTGCTACCTAAATAGCATAGCCAAAACTCTGTCCAAATTCAAAATCAAGGCCACAGCATGGGCTACAAGCAGGGGTGCGAAATATGATAGCACATTTAAAGGTATAGGCAGTTATAAGGAATCTAGAACTCCAAACTGGTTGGAATTAAAAGGGTTTGGGGTCAGCCCAATAACCACCTCAGCATGTAACAACTTCATTCAACAAATGGAATTGACTGATTAA 3354 0.3709 MYSFKLHSATARLQFVRSSQPNCASNCRPTILGFGRSSQPQSARNCFPICVQFSTNSTIATQLQPQPEPKFKATVYDVFVSFRGKDIRQGFLSHLIEAFPRKQLHAFVDDKLERGDEISSSLLGAIERSSISLIIFSKDYASSRWCLEELEKIVECKEKYGQVVIPVFYNVDPTNVRHQTGSYENALVEQEKYYNSTKVNIWRSALNKSANLSGINSSAFRNDAELLQEIVKTIDLQLIRMGKHPVHSKGLIGIDKTIVHLESLLREESKHVRVIGIWGMGGIGKTTIAEEIFNRTNFEYEGCCFLANVREEIERHGITSVKTKLFATLLTSDVKIDTANALPTYVERRIGRKKVLIVLDDLNDSDQLEKIIGNYDQFGSGSRIIVTTRDKQVLIANNVDDVYEVRVLSNNDALDLFKLKAFNQNHLGVEYYELSKRVVNYAKGIPLVLKVLGHLLRGKDKEVWESQLDKLKRIPSKKVHSVMRLSYDDLDREEQKILLDIACFFSVVNLKVDFIKSLLKDCESDNSVTAGLERLKDKALITISEDSVVSMHDIIREMAWEIVRHESSDGLGNHSRLWDPNEIGDVLKNDKGSEVNRSITTRLSTLKNLNLRPHVFAKMCKLLFLDFHDEKFLDFHRTDNAPSRDLFPQGLQSLPNQLRYLRWICYPLKSLPEQFSAEKLAILNLSHSHVEKLWHGVKNLVNLKEVKLHGCEFLQELPDFSKAINLELLDISGCYQLSSVHPSVLSLDKLEKLKIFNCTSLTKLSGDTHLSSLSCLSLRYCKNLQEFSVTSENMNLLDLSWTRVNSLPSSFGRQSKLEILVIEGSGIKSLPSSIENLTRLHYLDARSCFKLQILPELPPSLETINACNCISLKTVLFPSTSAKQFKENRKSVLFCNCLKLDEQSLTAIGLNAQINLMKFAYQHFSVLDNDHIKNYGFYNHSYHYYQAVYMYPGSRIPEWLVYKTMEKDHVIVDLSSASPSPLLGFIFCFIIDEDLDIKDHTLKLNINISDENEGNKGSIEIYTSLPLRTITSDHVCALYDRRCSCYLNSIAKTLSKFKIKATAWATSRGAKYDSTFKGIGSYKESRTPNWLELKGFGVSPITTSACNNFIQQMELTD* 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0795 1117 Pfam TIR domain 76 234 IPR000157 GO:0007165
Apr10g0795 1117 SMART till_3 75 212 IPR000157 GO:0007165
Apr10g0795 1117 Pfam NB-ARC domain 262 488 IPR002182 GO:0043531
Apr10g0795 1117 Gene3D - 487 561 IPR036388 -
Apr10g0795 1117 Gene3D - 240 401 IPR027417 -
Apr10g0795 1117 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 77 1116 IPR044974 GO:0006952
Apr10g0795 1117 SUPERFAMILY "Winged helix" DNA-binding domain 478 588 IPR036390 -
Apr10g0795 1117 SUPERFAMILY L domain-like 602 909 - -
Apr10g0795 1117 PRINTS Disease resistance protein signature 274 289 - -
Apr10g0795 1117 PRINTS Disease resistance protein signature 349 363 - -
Apr10g0795 1117 PRINTS Disease resistance protein signature 442 456 - -
Apr10g0795 1117 PRINTS Disease resistance protein signature 768 784 - -
Apr10g0795 1117 SUPERFAMILY Toll/Interleukin receptor TIR domain 74 214 IPR035897 -
Apr10g0795 1117 Gene3D - 73 239 IPR035897 -
Apr10g0795 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 501 IPR027417 -
Apr10g0795 1117 Gene3D Ribonuclease Inhibitor 793 892 IPR032675 -
Apr10g0795 1117 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 77 1116 - -
Apr10g0795 1117 Gene3D Ribonuclease Inhibitor 586 792 IPR032675 -
Apr10g0795 1117 ProSiteProfiles TIR domain profile. 74 238 IPR000157 GO:0007165
Apr10g0795 1117 Gene3D - 407 486 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0795 Apr-Chr10 19906206 19912738 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0795 67 856 WRKY Transcription Factor Family AT4G12020 32.877 1.61e-102 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0795 - - ccaj:109818162 1443.71