Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0789 ATGGTTTTCAACAAACGAAAGAGTATAGTAGCGCAAGCAAGGTCAGACAGAGCTCTTCATCAATTTGTGTACGATGTTTTTGTTAGCTTTAGAGGCAAAGACATTCGCCATGGTTTCCTCAGCCACTTGACAGAGGGTTTTATTCGAAAGCAAATACATGCCTTTGTAGATGATAAACTTGAGAGAGGAGAATATATATTGCCTTTACTTCTTGAAGTAATTGAAATATCATTCATTTCATTGATCATATTCTCAGAAAACTATGCTTCTTCGCGTTGGTGTTTGCAAGAACTCGTGAAAATAGTTGAATGCAAAGAAAAATATGGGCAAATAGTAATACCTATTTTCTACCATGTGGATCCCACAGATGTAAGACATCAAACAGGGAGTTATGCACAAGCATTTGTTGAACATGAGCTTTTGTATAATTTGACTACGGTGCAAATCTGGAGACATGCTTTGTACAAAGCTGCAAATTTATCAGGAATTAAGTCATCACAATTTCGGAATGAAGCTGAGCTACTTGAACAAATCATTAATCTGGTGTTGAAGAGGTTGAGTACTAAACACGTGTATAACTCAAAAGGACTTTTTGGAATTAGTGAACAAGTTGCATATTTAGAAATATTATTACGTCTAGAGTTAAAAGATGTTCGTGTCATTGGAATTTGGGGCATGGGTGGTATTGGTAAGACAACCATTGCAGAAGCAATATTTAATAAACTGTGTTCTACGTATGAAGGCCATTGCTTTTTGGCAAATTTAAGAGAAGAATCAAGAAGACATGGACTAATTTGTTTAAAAGAAAAGCTTTTTTCTACATTACTAGCTGAGGATGTTAAAATGGATACACCGAATGAATTGTCTGATTATATTAAGAGAAGAATTGGTCGTATGAAGGTTCTTATTGTTCTTGATGATATGAATGATTCAGATCAATTAGAAATATTATTTGGGAAGGTTGATTGGTTTGGACCAGGTAGTAGAATAATTATAACAAGTAGAGATAAGCAAGTGCTTATTGCTAACAAAGTTAATGATATATACCGAGTTTGGGGATTAAGTTCCAGTGAAGCACTTAAACTTTTCAATGTGAATGCATTTAACCAAAGTCATCTTGAAAATGATTATTACGAGCTATCAAAGAAGGTGATTAGTTATGCCGATGGTGTTCCATTAGTTCTTAAAGTTTTGGGGCATCTTCTTCATGGAAAAGATAAGGAAGTATGGAAAAGTCAGCTAGACAAACTTAGAAAAATGCCAACTAAAAAGGTTCATGATGTAATGAGACTGAGCTATGATGATCTAGATCGTGAAGAGCAAAAGATTTTTTTAGATCTTGCATGCTTCTTTAGTGGATTAAATTTGAAAGTGGAATACTTAAAATTCTTATTGAAAGATGATCGAAGTGATAATTCAGTGGCTGTTGGGTTAGAAAGGTTGAAAGACAAAGCTCTTATAAATATTTTCAGAGATAATGTTGTATCTATGCATGACATTATAAAAGAAATGGGTTGGGAGATTGTTCGTCAAGAATCTAATGAATACCCGGGAAGTCCCAGTCGATTATGGGATCCTGTTGACCTTTATGCTTCACTAAACAATGCTAAGGGGATTGAGGCCATTAGAAGCATAAGGATGCACTTGTCATTTCTCCGGAAGCTGAAATTATGCCCTCACATATTTGCTAAGATGAACAAATTACAATTTCTCGATATTCATGGTGAATATGATGAAGACTGCTCAGATAATCTTCCTCAAGGGCTTCAACATTTGCCAACTGAACTAAGATATCTTCGTTGGGTGCAATACCCTTTGAAATCCTTGCCAGAGAAATTCAATGCTGAAAAACTTGTCTTATTAGACTTATCATATAGCAAAGTTGAAATGTTATGGAAGGGAGTTCAGAATCTAGAAAATTTAAAAGAAGTAAAACTCTTAGCTTGTTCTCTCTTGAAAGAACTACCGGACTTTTCAAAAGCCATAAATCTCGAAGTACTGGATATTCGTGGTTGTTGCTCATTGACTAGTGTGCATCCCTCTATTTTCTCCCATAACAAGCTTGATAAAAGAAAGGTTGAGTTTTGGAATTTCTTGCACTTGGATGAGCTTTCTTTAATGGCCATTCAATCTAATGCACAAATCAATGTGATGAAATTTGCATACCAACATTTATCCACACCGGAACGTAGTTATGCTGCAGGTTTCAATGATGAATATTTTCAAGCTGCATATGTATATCCAGGCAACAACATTCCTAAGTGGTTAGAGTTTCAAACAAAAAAGGACTACATGTTTATTAATATCTCTTCTGTGCCATATTCCCCTCGATTCGGCTTCATTTTCTGCTTCATTGTTGGCAAGGCAAAGTCAGAATTTGGTAGTTTGAATCTTGGCCTTACTATAATCAATGATGATGATGAAGAAGATGGAATGTTGAAGAGGACTCATGGAATGTACATGTCTAGAACAATAGACCATATTGCAGCAGATCATGTGTGTGTGATATATGATCAACGTTGGTCTTACCACCTAAATACCGTAGCCAAAAGTCAGCCATGGTTTAAAATCAAGGTCAGAAGTCGTGCATATCCCTTCAAACTCAATAGTCCAGATCCACCACAAGCAGTGTTAAAAGGGTTTGGTGTTAGTGTGGTAAGCAACACCACATATCACAACTTTATTCAACATGAATTAAGTGATCATTTAAGAAATAGATTTAGCTTGTGCTTAGTATCTTTATATGTATTTCCTTCTTATGGTTTAAGTTAA 2772 0.3532 MVFNKRKSIVAQARSDRALHQFVYDVFVSFRGKDIRHGFLSHLTEGFIRKQIHAFVDDKLERGEYILPLLLEVIEISFISLIIFSENYASSRWCLQELVKIVECKEKYGQIVIPIFYHVDPTDVRHQTGSYAQAFVEHELLYNLTTVQIWRHALYKAANLSGIKSSQFRNEAELLEQIINLVLKRLSTKHVYNSKGLFGISEQVAYLEILLRLELKDVRVIGIWGMGGIGKTTIAEAIFNKLCSTYEGHCFLANLREESRRHGLICLKEKLFSTLLAEDVKMDTPNELSDYIKRRIGRMKVLIVLDDMNDSDQLEILFGKVDWFGPGSRIIITSRDKQVLIANKVNDIYRVWGLSSSEALKLFNVNAFNQSHLENDYYELSKKVISYADGVPLVLKVLGHLLHGKDKEVWKSQLDKLRKMPTKKVHDVMRLSYDDLDREEQKIFLDLACFFSGLNLKVEYLKFLLKDDRSDNSVAVGLERLKDKALINIFRDNVVSMHDIIKEMGWEIVRQESNEYPGSPSRLWDPVDLYASLNNAKGIEAIRSIRMHLSFLRKLKLCPHIFAKMNKLQFLDIHGEYDEDCSDNLPQGLQHLPTELRYLRWVQYPLKSLPEKFNAEKLVLLDLSYSKVEMLWKGVQNLENLKEVKLLACSLLKELPDFSKAINLEVLDIRGCCSLTSVHPSIFSHNKLDKRKVEFWNFLHLDELSLMAIQSNAQINVMKFAYQHLSTPERSYAAGFNDEYFQAAYVYPGNNIPKWLEFQTKKDYMFINISSVPYSPRFGFIFCFIVGKAKSEFGSLNLGLTIINDDDEEDGMLKRTHGMYMSRTIDHIAADHVCVIYDQRWSYHLNTVAKSQPWFKIKVRSRAYPFKLNSPDPPQAVLKGFGVSVVSNTTYHNFIQHELSDHLRNRFSLCLVSLYVFPSYGLS* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0789 923 Gene3D Ribonuclease Inhibitor 528 721 IPR032675 -
Apr10g0789 923 Gene3D - 353 437 IPR042197 -
Apr10g0789 923 Gene3D - 23 188 IPR035897 -
Apr10g0789 923 SMART till_3 23 160 IPR000157 GO:0007165
Apr10g0789 923 Pfam NB-ARC domain 215 433 IPR002182 GO:0043531
Apr10g0789 923 SUPERFAMILY L domain-like 548 707 - -
Apr10g0789 923 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 25 690 - -
Apr10g0789 923 Pfam TIR domain 24 188 IPR000157 GO:0007165
Apr10g0789 923 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 696 898 IPR044974 GO:0006952
Apr10g0789 923 PRINTS Disease resistance protein signature 220 235 - -
Apr10g0789 923 PRINTS Disease resistance protein signature 636 652 - -
Apr10g0789 923 PRINTS Disease resistance protein signature 388 402 - -
Apr10g0789 923 PRINTS Disease resistance protein signature 295 309 - -
Apr10g0789 923 Gene3D - 189 347 IPR027417 -
Apr10g0789 923 SUPERFAMILY "Winged helix" DNA-binding domain 423 530 IPR036390 -
Apr10g0789 923 ProSiteProfiles TIR domain profile. 22 186 IPR000157 GO:0007165
Apr10g0789 923 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 690 IPR044974 GO:0006952
Apr10g0789 923 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 162 IPR035897 -
Apr10g0789 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 447 IPR027417 -
Apr10g0789 923 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 696 898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0789 Apr-Chr10 19705329 19708898 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0789 24 672 WRKY Transcription Factor Family AT4G12020 31.818 4.76e-85 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0789 - - aprc:113850949 880.552