Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0737 ATGGAAATGGCTTCCACTCCCCGCACCGTCGAAGAGATCTTCAAAGATTACAGCGCTCGTAGAACCGCTATCGTTCGTGCTCTCTCTCAAGATGTCGATGAATTCTATGGACTCTGTGATCCAGATAAGGAGAACTTGTGTCTCTATGGACATCCGAATGAAACATGGGAAGTGACTCTGCCAGCAGAGGAGGTTCCGCCCGAGCTTCCGGAGCCGGCTCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCCCTGGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCCTTCTACCTTGGCGCTCGTCTTAACCGCAATGAAAGGAAGCGGTTATTTAGCTTGATCAATGACCTTCCTACTGTTTTTGAAGTTGTGACTGAGAGGAAGCCAGTGAAGGACAAGCCCACTGCAGACAGTGGAAGCAAATCCAGGGGTAGCACCAAGGTTAGTAGATCAAGCGATGGGCAAGTTAAAAGCAACCCAAAGTTTGCGGACGAAGGTTACGAGGAAGAAGATGATGAGCATAGCGAAACCCTTTGTGGGAGCTGTGGTGGAAATTACAATGCAGACGAATTTTGGATTGGCTGTGATATATGTGAGAGGTGGTTCCATGGTAAGTGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCAGCATGAGGCGGGGCAGGCCCTAA 726 0.4904 MEMASTPRTVEEIFKDYSARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPVKDKPTADSGSKSRGSTKVSRSSDGQVKSNPKFADEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSMRRGRP* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0737 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 235 IPR013083 -
Apr10g0737 241 PANTHER CPG BINDING PROTEIN 3 240 IPR045104 GO:0006355|GO:0042393
Apr10g0737 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Apr10g0737 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 3 240 - -
Apr10g0737 241 Pfam PHD-finger 188 235 IPR019787 -
Apr10g0737 241 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Apr10g0737 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Apr10g0737 241 MobiDBLite consensus disorder prediction 148 167 - -
Apr10g0737 241 CDD PHD_AL_plant 187 237 IPR044104 -
Apr10g0737 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Apr10g0737 241 SMART PHD_3 187 235 IPR001965 -
Apr10g0737 241 MobiDBLite consensus disorder prediction 137 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0737 Apr-Chr10 18543526 18546419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0737 4 240 Alfin-like Transcription Factor Family AT5G05610 77.731 2.27e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Apr10g0737 Alfin 6.3e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0737 - - gmx:100779170 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0737 10 18543526 18546419 Apr10g0737 10 18543526 18546419 ECH
Apr4g2035 4 29136906 29140189 Apr10g0737 10 18543526 18546419 PCT