Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0736 ATGGGTGTGGACTACTATAAAATTCTTCAGGTAGATCGAAATGCCAAAGATGATGATCTCAAGAAAGCTTATCGCAAGCTTGCCATGAAATGGCATCCTGATAAGAACCCTAACAGCAAGAAGGAAGCTGAAGCCAAATTCAAGCAAATCTCAGAAGCCTATGATGTTTTGAGTGATCCACAAAAGAGAGCAGTGTATGATCAGTATGGTGAGGAGGGATTGAAGGGGCAGGTGCCGCCCCCGGGTGCCAGTGGGTTTGCCAGTGGCAGTGATGGCGGGCCGACAACATTCCGGTTCAACCCGAGAAGTGCAGATGATATTTTCTCGGAGTTCTTTGGGTTTTCTAGCCCCTTTGGTGGAATTGGAGATATGGGTGGCCGTCCTGGTGCATCTGGCTTTCCCAGAGGGATGTTTGGGGATGACATTTTTGCTTCTTTTAGGAGTGGGGCTGCAGAAAACTCTGGCAATGTGCAGAGGAAAAGTGCTCCCATTGAGAGAACATTGCAATGCAGTTTGGAGGATTTCTACAAAGGGACTACCAAAAAAATGAAGATTTCCAGGGATGTGATTGATGCCAGTGGGAGGCCCACCACTGTAGAGGAAATTCTAACCATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACATTTCCAGAGAAGGGAAATGAACAAAGAGGAGTTATACCAGCAGACCTTGTTTTTATTATTGATGAGAAACCTCATAGTGTCTTCAAGAGGGATGGCAACGATCTTGTTGTAACTCAGAAGATATCTCTTGTAGAAGCTTTGACAGGTTATATGGCGCAACTGGCAACCCTTGACGGGAGGAATCTTACAGTCCCGATCAACTCCATCATTAGCCCAACATATGAAGAAGTTATTATAGGAGAGGGTATGCCAATTCCCAAGGAACCTTCCAAAAAGGGAAACTTGAGAATCAAGTTCAATATCAAGTTTCCCTCTAGACTTACATCGGAGCAGAAAACTGGCATAAAACGATTATTGACATCATAA 1020 0.4441 MGVDYYKILQVDRNAKDDDLKKAYRKLAMKWHPDKNPNSKKEAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPPGASGFASGSDGGPTTFRFNPRSADDIFSEFFGFSSPFGGIGDMGGRPGASGFPRGMFGDDIFASFRSGAAENSGNVQRKSAPIERTLQCSLEDFYKGTTKKMKISRDVIDASGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHSVFKRDGNDLVVTQKISLVEALTGYMAQLATLDGRNLTVPINSIISPTYEEVIIGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKTGIKRLLTS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0736 339 CDD DnaJ_C 162 325 - -
Apr10g0736 339 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 338 - -
Apr10g0736 339 Gene3D - 243 323 - -
Apr10g0736 339 PRINTS DnaJ domain signature 6 24 IPR001623 -
Apr10g0736 339 PRINTS DnaJ domain signature 24 39 IPR001623 -
Apr10g0736 339 PRINTS DnaJ domain signature 42 62 IPR001623 -
Apr10g0736 339 PRINTS DnaJ domain signature 62 81 IPR001623 -
Apr10g0736 339 CDD DnaJ 4 59 IPR001623 -
Apr10g0736 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 245 331 IPR008971 GO:0006457|GO:0051082
Apr10g0736 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 243 IPR008971 GO:0006457|GO:0051082
Apr10g0736 339 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
Apr10g0736 339 Pfam DnaJ domain 4 67 IPR001623 -
Apr10g0736 339 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Apr10g0736 339 SMART dnaj_3 3 62 IPR001623 -
Apr10g0736 339 Gene3D DnaJ domain 3 120 IPR036869 -
Apr10g0736 339 MobiDBLite consensus disorder prediction 72 99 - -
Apr10g0736 339 Gene3D - 163 241 - -
Apr10g0736 339 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 338 - -
Apr10g0736 339 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Apr10g0736 339 Pfam DnaJ C terminal domain 164 322 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0736 Apr-Chr10 18515760 18521468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0736 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 4.12e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0736 K09510 - csin:114278081 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0736 10 18515760 18521468 Apr10g0736 10 18515760 18521468 ECH
Apr4g2034 4 29122686 29131280 Apr10g0736 10 18515760 18521468 PCT