Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0731 ATGGGTTCTCGAAACCAAGAAGCATGGCTCTTGGAGAATGGGAATAACAACGTTAACCACAAGGGGTTGAGCAAGGAAATGAGACATGGAAGAACAGCACATAACATGTCATCATCTTCAATGCGCAAGAAATCTGACCTCACTATTGTCACCAAGCTTCGTTCGGGTCTCCTTAGAAACATCCTCGTTAACATCCAAGAGCCTTGGGTTTTTGCGTTGAGTTTACTTGGGCTTACCCCACTCGCCGAACGAGTCAGCTTCTTGACAGAGCAGGTGGCTTATTATACAGGTCCCACAGTGGGAGGACTTTTAAATGCAACATGTGGGAATGTTACAGAGCTCATCATAGCAATTTTTGCACTTAGCCACAACAAAATTGCTGTGGTCAAATATTCTCTCCTGGGTTCCATCCTTTCGAACCTTCTTTTGGTTCTTGGAACCTCTCTATTCTGTGGTGGCATTGCAAACCTTAGACAGGAACAGAAATATGATAGAAGACAAGCAGATATGAACTTGCTTATGCTGTTTGTGGCATTGTTATGCCACTTGCTTCCAATGCTCTTTCATTATGGTGGAGCCTCAGTAGGTGCCACTGCAGACTCATCACTGCACTTGTCAAGAGCTGCTAGCATTGTTATGGTGACTGCATATAGTGCTTACCTTATCTTCCAGTTGTGGACTCACCGGAAACTATTTGAAGCCCAAGATCAGGAAGATGATGAAGAGGGTGACAATGCTTCAGAAGAAGCAGTGATAGGATTCTGGAGTGCAATTGCCTGGCTGGTCGGGATGACTGTACTCATTGCCTTGCTGTCTGAATATGTGGTGCAAACAATTGAGGATGCATCTGATTCATGGGGCTTGTCTATCAGTTTCCTGAGCATAATCTTACTGCCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCTATCATATTCGCTTTCAAGAACAAGCTGGACATTACATTGGGTGTTTCCTTGGGTTCTTCAACTCAAATTAGCATGTTTGTGGTTCCACTATGTGTAATTGTTTCTTGGATTCTGGGAATCAAAATGGACCTCAACCTCAACCTTCTAGAGACAGTTTCTCTTGCTGTGGCAATAGTAACCACAGCCTTCGCATTACAGGACGGAACTTCTCACTACATGAAAGGCCTTGTTCTCATTCTCTGCTACGTTGTCATTGGGGCTTGCTTTTTTGTGCAAAGAATTCCCTTCAACCAAAGTAATGTTACTAATGTAACGCTTAAACCAGCAACTGAAGCAGCTTTTACAGCTTAA 1281 0.4372 MGSRNQEAWLLENGNNNVNHKGLSKEMRHGRTAHNMSSSSMRKKSDLTIVTKLRSGLLRNILVNIQEPWVFALSLLGLTPLAERVSFLTEQVAYYTGPTVGGLLNATCGNVTELIIAIFALSHNKIAVVKYSLLGSILSNLLLVLGTSLFCGGIANLRQEQKYDRRQADMNLLMLFVALLCHLLPMLFHYGGASVGATADSSLHLSRAASIVMVTAYSAYLIFQLWTHRKLFEAQDQEDDEEGDNASEEAVIGFWSAIAWLVGMTVLIALLSEYVVQTIEDASDSWGLSISFLSIILLPIVGNAAEHAGAIIFAFKNKLDITLGVSLGSSTQISMFVVPLCVIVSWILGIKMDLNLNLLETVSLAVAIVTTAFALQDGTSHYMKGLVLILCYVVIGACFFVQRIPFNQSNVTNVTLKPATEAAFTA* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0731 426 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 2 67 IPR004713 GO:0006812|GO:0008324|GO:0016021
Apr10g0731 426 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 67 413 IPR004713 GO:0006812|GO:0008324|GO:0016021
Apr10g0731 426 Pfam Sodium/calcium exchanger protein 257 395 IPR004837 GO:0016021|GO:0055085
Apr10g0731 426 Pfam Sodium/calcium exchanger protein 69 226 IPR004837 GO:0016021|GO:0055085
Apr10g0731 426 TIGRFAM caca2: calcium/proton exchanger 62 400 - -
Apr10g0731 426 Gene3D - 98 403 IPR044880 -
Apr10g0731 426 TIGRFAM cax: calcium/proton exchanger 63 400 IPR004798 GO:0006816|GO:0015369
Apr10g0731 426 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 67 413 - -
Apr10g0731 426 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 2 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0731 Apr-Chr10 18394896 18399541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0731 7 405 Antiporters AT2G38170 64.884 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0731 K07300 - gmx:100782052 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0731 10 18394896 18399541 Apr10g0731 10 18394896 18399541 ECH
Apr4g2022 4 28927099 28931705 Apr10g0731 10 18394896 18399541 PCT