Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0728 ATGTATGTCGCAATGATGCGCAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGATATACAGTTTGCCAATACTATAGCTACTAATTATCCAAGAGAATGTGATGGCGCGTGCTTACAAATGAGATTATCTTATAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGATTGTCATCTTGCTGGGGCCTTGGGATTGCTTAGAATTCTCATATACAAGGTGTATGGGGATGGGAAGACAACCATGTCCATTTATGAAAGAAAAGCCAGTCTGAAGGAGTTCTATGGTGTGATCTTTCCCTCTTTACTACAACTCCACAGAGGAATCACTGATGTAGAAGAAAGGAAACAAAAAGATTTATGGGCTACAAAGTACAGGCCAAAAGATATAGTAAGAAAAGGAAAACTATCTGAAATTGATATAGAGAGAGAAGAGGAATGTGGTATTTGCATGGAGATGAACAATAAGGTTGTGTTGCCCAACTGCAACCACTCATTGTGTGTGAAATGCTATAAAGACTGGCATGCCCGGTCTCAGTCTTGCCCTTTCTGTCGGGACAGTCTTAAAAGAGTAAACTCTGGTGACCTATGGATCTACATGAACAGCAGTGAGATAGATGACTTGGCTTCAATCAACAAGGAGAATTTAAGAAGACTATTTATGTACATTGACAAGTTGCCTTTGATTGTACCTGATCCTATATTCATGTCTTATCCTCAGCGCTTCTGA 741 0.4035 MYVAMMRKSFKDSLKALEADIQFANTIATNYPRECDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKVYGDGKTTMSIYERKASLKEFYGVIFPSLLQLHRGITDVEERKQKDLWATKYRPKDIVRKGKLSEIDIEREEECGICMEMNNKVVLPNCNHSLCVKCYKDWHARSQSCPFCRDSLKRVNSGDLWIYMNSSEIDDLASINKENLRRLFMYIDKLPLIVPDPIFMSYPQRF* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0728 246 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Apr10g0728 246 PANTHER RING FINGER PROTEIN 41, 151 5 234 - -
Apr10g0728 246 SUPERFAMILY RING/U-box 140 194 - -
Apr10g0728 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 198 IPR013083 -
Apr10g0728 246 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Apr10g0728 246 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 5 234 - -
Apr10g0728 246 SMART ring_2 151 188 IPR001841 -
Apr10g0728 246 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0728 Apr-Chr10 18291772 18295181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0728 95 193 C3H Transcription Factor Family AT5G01960 30.769 7.71e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0728 K25840 - gmx:100819267 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0728 10 18291772 18295181 Apr10g0728 10 18291772 18295181 ECH