Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0726 ATGAAGAATGCAAAGGGCAAGGGAGCATTGAAGATCTCCAAAGAAGCTCTGAAGCCTGTTGATGACCGAAAGGTTGGAAAGAGGAAGGCTTCTAGTAGGCCTGACAAGAGTAGTGCACCAAAGGCAAAGAAGGAGAAGAAGGCCAAGAAAGACCCCAACAAGCCGAAAAGGCCACCCACTGCTTTCTTTGTGTTCCTTGAGGAGTTCCGAAAGACCTTTAAGGCAGAGAATCCTAGTGTGAAGGCTGTATCAGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCATGTCTACTGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAGAGGAAAGCTGAGTATGAAAAACTTATGAATGCTTATAATAAAAAGCAGGGAAGCTCTGCAGATGATGAATCTGACAAGTCCAAATCTGAAGTAAATGATGAAGATGATGAAGCTAGTGGAGAGGAGGACCAGCAGGAGGAGGAGGAGAACGATGACGAGGAGGAAGAGGAGGAGGACGAAGATGATGACTGA 525 0.4629 MKNAKGKGALKISKEALKPVDDRKVGKRKASSRPDKSSAPKAKKEKKAKKDPNKPKRPPTAFFVFLEEFRKTFKAENPSVKAVSAVGKAGGEKWKSMSTAEKAPYEAKAAKRKAEYEKLMNAYNKKQGSSADDESDKSKSEVNDEDDEASGEEDQQEEEENDDEEEEEEDEDDD* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0726 174 MobiDBLite consensus disorder prediction 8 56 - -
Apr10g0726 174 MobiDBLite consensus disorder prediction 145 174 - -
Apr10g0726 174 Coils Coil 106 126 - -
Apr10g0726 174 Coils Coil 142 174 - -
Apr10g0726 174 CDD HMG-box 55 120 - -
Apr10g0726 174 SUPERFAMILY HMG-box 46 128 IPR036910 -
Apr10g0726 174 MobiDBLite consensus disorder prediction 129 144 - -
Apr10g0726 174 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 1 163 - -
Apr10g0726 174 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 55 124 IPR009071 -
Apr10g0726 174 Pfam HMG (high mobility group) box 55 124 IPR009071 -
Apr10g0726 174 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 163 IPR031061 -
Apr10g0726 174 MobiDBLite consensus disorder prediction 85 106 - -
Apr10g0726 174 MobiDBLite consensus disorder prediction 1 59 - -
Apr10g0726 174 SMART hmgende2 54 125 IPR009071 -
Apr10g0726 174 MobiDBLite consensus disorder prediction 121 174 - -
Apr10g0726 174 Gene3D High mobility group box domain 38 140 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0726 Apr-Chr10 18277353 18279992 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Apr10g0726 HMG_box 1e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0726 K25507 - csin:114274415 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0726 10 18277353 18279992 Apr10g0726 10 18277353 18279992 ECH