Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0708 ATGAACAGAGGAATTGAGGTTCTTTCTCCAGCTTCTTACCTTCGAAGTTCTAATTGGTTGTTCCAAGAGAGCCTGGGAACCAAATGGACACCACAAGAGAACAAGTTGTTTGAGAATGCTTTGGCTGTGTATGATAAGGACACTCCAGATCGTTGGTTGAAGGTGGCAGCCATGATTCCAGGTAAGACTGTTGGTGATGTGATCAAACAGTACAAAGAACTGGAGGAAGATGTGAGTGTCATTGAATCTGGGTTTATCCCAGTTCCTGGGTACACCGCTGGTTCTTTCACTTTGGAGTGGGTTAACAATCAAGGATTTGATGGGTTCAAGCAATTTTATGGAGTTAATGGCAAAAGGGGTACTTCCACTAGGCCATCTGACCAGGAAAGGAAGAAAGGAGTGCCATGGACTAAAGAGGAGCACAGACAGTTTCTGCTGGGTCTCAAGAAGTATGGTAAAGGAGATTGGAGAAACATCTCTCGCAATTTTGTGACCACAAGGACACCAACTCAGGTTGCAAGTCATGCTCAGAAATATTTCATTAGGCAACTAAATGGAGGGAAGGATAAGAGGAGATCAAGTATCCATGACATCACAATGGTCAATCTCCCAGAAACAAAATCTTCATCAGAGAGTAACAAACCCCCTTCTCCAGATCACTCAATGAAGGATGTGAATCCACACCAGAATCAAAGATTGTCTAGCTTGGTTAAACAGGAATATGATTGGAAATTGCCATGTGAGAGTGTTCCTATGCTTTTCAATTCAACAAATGGAAACATGTTCATGACACCACTTTGTGGTATTTCTCCATATGGATCTAAACCACAGGAACAGTATTTACTCAGAGGCAGTCTCAGTGGATGCCAATTTGGACCTTATGATAGCATTATGCAGATGCAATCTATGCAACAAAAGTGA 921 0.4224 MNRGIEVLSPASYLRSSNWLFQESLGTKWTPQENKLFENALAVYDKDTPDRWLKVAAMIPGKTVGDVIKQYKELEEDVSVIESGFIPVPGYTAGSFTLEWVNNQGFDGFKQFYGVNGKRGTSTRPSDQERKKGVPWTKEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLNGGKDKRRSSIHDITMVNLPETKSSSESNKPPSPDHSMKDVNPHQNQRLSSLVKQEYDWKLPCESVPMLFNSTNGNMFMTPLCGISPYGSKPQEQYLLRGSLSGCQFGPYDSIMQMQSMQQK* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0708 306 MobiDBLite consensus disorder prediction 117 136 - -
Apr10g0708 306 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Apr10g0708 306 MobiDBLite consensus disorder prediction 199 216 - -
Apr10g0708 306 MobiDBLite consensus disorder prediction 187 231 - -
Apr10g0708 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Apr10g0708 306 CDD SANT 28 74 IPR001005 -
Apr10g0708 306 SMART sant 132 182 IPR001005 -
Apr10g0708 306 SMART sant 25 77 IPR001005 -
Apr10g0708 306 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Apr10g0708 306 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 275 IPR043363 -
Apr10g0708 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Apr10g0708 306 CDD SANT 135 180 IPR001005 -
Apr10g0708 306 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Apr10g0708 306 PANTHER MYB TRANSCRIPTION FACTOR MYB51 3 275 - -
Apr10g0708 306 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Apr10g0708 306 Gene3D - 22 88 - -
Apr10g0708 306 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Apr10g0708 306 Gene3D - 134 184 - -
Apr10g0708 306 SUPERFAMILY Homeodomain-like 130 183 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0708 Apr-Chr10 17512361 17515035 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr10g0708 Myb_DNA-binding 7.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0708 - - gmx:778077 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0708 10 17512361 17515035 Apr10g0708 10 17512361 17515035 ECH
Apr10g0708 10 17512361 17515035 Apr9g1401 9 23607577 23609728 ECH
Apr10g0708 10 17512361 17515035 Apr10g2088 10 33612121 33614265 ECH