Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0674 ATGGAACCCGAAGAAGCCGCCGCCGCAACCGCTCTCGACGCCGACGGAAGCGGCGACGAGGGGTTGCTAGGTTTAGGTGGCGGCGGCGGCGGTAGGGACCGAGTGAAGGGTCCTTGGTCGCCGGAAGAGGACGCTATTCTGAGCCGGCTCGTGAGTAAGTTCGGCGCCAGAAACTGGAGCCTCATCGCACGCGGGATCGCCGGAAGATCCGGCAAGTCGTGCCGGCTTCGGTGGTGCAACCAGCTCGACCCCGCCGTTAAGCGCAAGCCCTTCACTGATGAGGAGGATCGGATCATAGTTGCTGCTCATGCAATCCACGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCCGGAAGAACAGATAATGCCATTAAGAACCACTGGAATTCTACTTTGAGGCGTCGGGGAGTTGAGCTTGATAAGATTAAATTAGAATCTGGTAACCTAGGGGAAGATATTAGCTTGGACAAAGCCAAAGCATCATCAGAAGATACTTTATCATGTGGGGATGTTAATTCTTTGAAATCCTCAGAAGGAAGAGATGTCAGTTCTGGGGAGATCATGGATGATAAATTTGAAGACAAAGCACAAACTGAGGGTCAACTACACCATGAAGTTAGGGATCCACCTACCCTTTTCCGGCCAGTAGCACGTGTAAGTGCTTTTAGTGTATATCACTCTTATGATGGTTTGCAGCCTTCAACATCAATTCAAAGACCTGTTCCGATGCAAGGATCCATTTTACAATCATCAAAACCAGATATGGAATTCTGTAAAATGCTTGAAGGAATTTATAGTGACCAGCCAGTGCCTCACCAGTGTGGCCATGGTTGCTGTGCTACTCCAAAGTCCAAAAGCTCCTTGTTGGGACCAGAATTTGTCGAATTTTCAGAACCCCCATCTTTCCCTAATTTTGAGTTAGCTGCAATAGCTGCAGACATTAGTAACCTCGCTTGGCTTAAAAGTGGATTGGAGAATAGTAGTGTCAAAATGATGGGCGACACCTCTGGCAGGGTAATATCTAATGGATCTCAAGTACATATTGGCCATTAG 1056 0.4886 MEPEEAAAATALDADGSGDEGLLGLGGGGGGRDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVELDKIKLESGNLGEDISLDKAKASSEDTLSCGDVNSLKSSEGRDVSSGEIMDDKFEDKAQTEGQLHHEVRDPPTLFRPVARVSAFSVYHSYDGLQPSTSIQRPVPMQGSILQSSKPDMEFCKMLEGIYSDQPVPHQCGHGCCATPKSKSSLLGPEFVEFSEPPSFPNFELAAIAADISNLAWLKSGLENSSVKMMGDTSGRVISNGSQVHIGH* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0674 351 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Apr10g0674 351 SMART sant 35 84 IPR001005 -
Apr10g0674 351 SMART sant 87 135 IPR001005 -
Apr10g0674 351 Gene3D - 35 87 - -
Apr10g0674 351 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Apr10g0674 351 CDD SANT 38 80 IPR001005 -
Apr10g0674 351 Pfam Myb-like DNA-binding domain 39 96 - -
Apr10g0674 351 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
Apr10g0674 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 82 IPR017930 -
Apr10g0674 351 PANTHER - 3 328 - -
Apr10g0674 351 CDD SANT 90 133 IPR001005 -
Apr10g0674 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Apr10g0674 351 PANTHER MYB PROTEIN-RELATED 3 328 - -
Apr10g0674 351 Gene3D - 90 136 - -
Apr10g0674 351 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0674 Apr-Chr10 16602888 16607522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0674 21 351 MYB Transcription Factor Family AT3G09230 52.616 1.08e-110 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr10g0674 Myb_DNA-bind_6 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0674 K09422 - gmx:100811740 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0674 10 16602888 16607522 Apr10g0674 10 16602888 16607522 ECH