Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0672 ATGTCAACTCTTCAGATGTCTTGTGTGGATTTGGAGCAAGGAATTCATCATCACCACCGTTCTGTGACTGGCAGTGACATGAGCATGTGCTTTTCTGATGCTGAGAATGGTTCTTGCTATTCCCATTTCTATTCAACAAATGGTGACACTTATGATGATTATAGCTTTGCTTGTGTTTCTGATTCTGAGGATGAGGGTGCTGGTGATTTTAGGAGGGATTCGTCTGTTACTGATTGTTCTGTGGAGGTGGAAATTGAAAGTAGGGTTCCTGAAATTAAGGTGCATTTGGCCAAAGTGGAGAAGGATTGTAGGATTTGTCACCTGGGTTTGGAAAGCGATAGTCAAGATTGTGGAGTTCCCATTGAATTGGGTTGTTCTTGCAAGGGTGATTTAGGTACTGCTCACAAGAATTGTGCTGAGGCTTGGTTCAAGATTAAGGGGAACAGGACATGTGAAATATGTCATTCTGTGGCACTGAACGTTTATGGGGCAAACGAGGATACATCACAGAGTTTGAGTGATAGCAACAATGGTATTGCCATAGCATCCACAATCACAACACAAACCCAATCTCCAGATACTCGAAGATTTTGGCAGGGCCATCGCTTCCTCAATTTTCTGCTTGCTTGTATAGTTTTTGCATTTGTCATATCCTGGCTTTTTCACTTCAACATGCCCTCATCGTAA 687 0.425 MSTLQMSCVDLEQGIHHHHRSVTGSDMSMCFSDAENGSCYSHFYSTNGDTYDDYSFACVSDSEDEGAGDFRRDSSVTDCSVEVEIESRVPEIKVHLAKVEKDCRICHLGLESDSQDCGVPIELGCSCKGDLGTAHKNCAEAWFKIKGNRTCEICHSVALNVYGANEDTSQSLSDSNNGIAIASTITTQTQSPDTRRFWQGHRFLNFLLACIVFAFVISWLFHFNMPSS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0672 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 162 IPR013083 -
Apr10g0672 228 PANTHER ZINC FINGER, RING-CH-TYPE 5 227 - -
Apr10g0672 228 SMART ringv_2 102 155 IPR011016 GO:0008270
Apr10g0672 228 Pfam RING-variant domain 103 154 IPR011016 GO:0008270
Apr10g0672 228 ProSiteProfiles Zinc finger RING-CH-type profile. 95 161 IPR011016 GO:0008270
Apr10g0672 228 PANTHER OS01G0850200 PROTEIN 5 227 - -
Apr10g0672 228 SUPERFAMILY RING/U-box 100 157 - -
Apr10g0672 228 CDD RING_CH-C4HC3_MARCH 103 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0672 Apr-Chr10 16574928 16577420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0672 47 228 C3H Transcription Factor Family AT5G05830 52.747 1.25e-65 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0672 - - gmx:100813946 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0672 10 16574928 16577420 Apr10g0672 10 16574928 16577420 ECH
Apr10g0672 10 16574928 16577420 Apr9g1388 9 23517865 23519864 ECH
Apr10g0672 10 16574928 16577420 Apr10g2077 10 33538392 33540294 ECH
Apr4g1967 4 28092535 28095457 Apr10g0672 10 16574928 16577420 ECH