Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0624 ATGGAACAGGATCAATGTTGGATGCAGACAAAAAGGAAGTTCTCTGTGGCCTCTAATCTCACTTTACCAACAAACCCTTCCTATGGAGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCAGCTAATTCTCTAGGTGGCTGCATATGGCCTCCAAGATCATACTCTTGCAGCTTTTGTAGAAGAGAGTTTAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCTAGCCCCAACAATGAAATTCTATGTCATGACCTTGAAACACATCAACTCCATAAGCCAGTTCAAAGTCCTTTTGCATCTTTGAGTGGTTACCTATACCCTTCTCCTGTTTGTGGATTGGCTTATAAAAGAACTAACCCTAATTCTGATCGTGATTTTGTTGTTTCACCTTCGTCATCCCCCTCACCTTCCAAGGCCTTATTAGCTCCATCAGTTAATGGTAACTGCAGTGAGGAAACGCTGATTCCACTTTATGATTCCTCTATTCTCCCCAAGATTTCCCCACTCAACAATTCTTCTGAATCATGGCCAAATTTAGGTGAAGATCACAGATTATATTCATGTAAGTTCCACCCTGAGGCTGATATTAAAAATCCCTCCAAGGGAATAATAATGGATTCTAGTTGTAGGGGTGATGAGGGGGATAATGATAATGATGATGTTGGTGGGGCTATGAGCTTGAATTTGGTTGTGCATAGAGCTCACCCATCTGTTCAGTTTGAGAGTAGTAAAGGGGTAGATCACAGTTGCAAGAAAAGGAAAACAGATGCTTCCTCAATTCTATTTTTCCAAAAGTCAAGCTCTGTTGATAGGCATCATGTGCTGCCAGAGATGTTTGAATTTAGCCCTAGCTCCATTGAAGAGCTAGATCTGGAGTTAAGGCTTGGAAACAGGTCCAAGGTATAG 951 0.4217 MEQDQCWMQTKRKFSVASNLTLPTNPSYGDSWEEQAFAEDAANSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPNNEILCHDLETHQLHKPVQSPFASLSGYLYPSPVCGLAYKRTNPNSDRDFVVSPSSSPSPSKALLAPSVNGNCSEETLIPLYDSSILPKISPLNNSSESWPNLGEDHRLYSCKFHPEADIKNPSKGIIMDSSCRGDEGDNDNDDVGGAMSLNLVVHRAHPSVQFESSKGVDHSCKKRKTDASSILFFQKSSSVDRHHVLPEMFEFSPSSIEELDLELRLGNRSKV* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0624 316 Pfam C2H2-type zinc finger 55 79 - -
Apr10g0624 316 PANTHER OS07G0101800 PROTEIN 1 316 - -
Apr10g0624 316 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 316 - -
Apr10g0624 316 SMART c2h2final6 55 77 IPR013087 -
Apr10g0624 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Apr10g0624 316 Gene3D Classic Zinc Finger 52 107 - -
Apr10g0624 316 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Apr10g0624 316 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0624 Apr-Chr10 14599976 14600926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0624 22 86 C2H2 Transcription Factor Family AT2G37740 72.308 4.43e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr10g0624 zf-C2H2_6 1.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0624 - - gmx:100801427 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0624 10 14599976 14600926 Apr10g0624 10 14599976 14600926 ECH
Apr4g1929 4 27377637 27378545 Apr10g0624 10 14599976 14600926 ECH