Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0616 ATGGTTGGTTCGGGTGAGAGCGAGAATGAGCTGTATGAGCAGCTATGGAAAGCTTGTGCGGGACCACTGGTGGATGTTCCTCGTGTTGGCCAGAGAGTGTTCTATTTTCCCCAAGGTCACATGGAGCAATTAGAGGCCTCCACCAACCAGGAACTGAATCAGAGGATTCCTCTGCTGAAGCTTCCCACGAAGATCCTTTGTCGTGTCGTGAACGTTCATTTACTGGCGGAGCAAGAAACAGATGAGGTTTATGCACAGATCACTTTGGTGCCAGAATCTAACCAAGATGAGCCTACAAGCCCTGATCCATGCACTACTGAACTTCCAAGGCCGCCAGTTCACTCATTCAGCAAGGTCTTAACTGCTTCGGATACCAGCACCCATGGCGGTTTCTCTGTTCTTAGGAAACATGCCACGGAATGCCTTCCTGCATTGGACATGTCCCAACCAACACCAACTCAGGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACTTGCTCACAACCGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTTTAAGAGGTGACAATGGAGAATTACGTGTTGGAGTGAGACGTCTTTCTCGTCAAGCAAGTAGCATGCCTTCATCTGTGATTTCCAGTCAGAGCATGCACCTTGGAGTTCTAGCAACTGCCTCTCATGCTGTTGCAACTCAGACACTTTTTGTAGTATATTATAAGCCAAGGACGAGCCAGTTCATCATAGCCGTGAACAAGTATTTGGAGGCTATGGACAACAAGGTTGGTGTTGGCATGAGGTTTAAGATGAGGTTTGAGGGGGATGATTCTGCTGAGACTGACAGAAGATTTTCGGGTACCATAGTTGGAGTTGAAGATATTTCACCTCATTGGATTAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAACCTTCAGCTGTTCCAAGACCTGATAGGGTTTCTCCATGGGAGATAGAACCGTTTGTGGCTTCTTCATCTACACCCTCAGTTCAACCTACTGCTGTAAAGACTAAGAGGGCTCGACCTACCAGTGAAATTCCAGATGTTGATACAACATCTGCTGCTTCTGTTTACTGGGATGCTGGGCTCAAACAGGTTGACATGACACAACTTAATGTTTTAGCTGAAAGCAAAAGGAGTGACAGTACCGGTATGTGGCATCATAAACAAGCTGATATGAATAGTAAAAGCAACTGCAGCGGCACTATGTTAAGAAATCAGACAGAAGGAAGTTGGCTATCTTCTCCCCATTCTAGTTGTCTTTCTCACTTATTTCAGGATGCAACAGATGACAAGAGTGCCTCAGCTTGGCCTGTTTCAAAGCCTAACTCATCCAGATTGAACAATGATAATGTGTTTGACCAAGTTGACAAGGAGAACAAAGTCGAGAATGCTATGAGTTATCGATTGTTTGGAATTGATCTTATTGATCATTCTAGAAACTCACCTGCTGTAGAGAAGGCATCTACACATGCAGTAAATGCACCCAGAATCATTGCTGATGGCTGTGCCAGCACCTTGTCCAGAACTGATACTGGCCACAAGTCCGATGCATCACCAAAGGAAAGTCAGAGCAAGCAAATTTGTCGAAGTCGTACCAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCTGTGGATTTGACCATGTTGGATGGATATGATCAACTTATACATGAATTGGAGGATATGTTTGACATAAAGGGACAGCTTAAACACAGGAATAAGTGGGAAATCGTCTTTACTGATGACGAAGGGGACATGATGCTTGTGGGAGACGATCCTTGGCCTGAATTCTGTAATATGGTGAGGCGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAGATGAGTTCCGGAAGCAAACTGCCAATATCTTCAGTTGAAGAAGGGACAGTAATAAGTTCAGACACTACCGAAACCTGA 2001 0.4503 MVGSGESENELYEQLWKACAGPLVDVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPTSPDPCTTELPRPPVHSFSKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLSRQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIAVNKYLEAMDNKVGVGMRFKMRFEGDDSAETDRRFSGTIVGVEDISPHWINSKWRSLKVQWDEPSAVPRPDRVSPWEIEPFVASSSTPSVQPTAVKTKRARPTSEIPDVDTTSAASVYWDAGLKQVDMTQLNVLAESKRSDSTGMWHHKQADMNSKSNCSGTMLRNQTEGSWLSSPHSSCLSHLFQDATDDKSASAWPVSKPNSSRLNNDNVFDQVDKENKVENAMSYRLFGIDLIDHSRNSPAVEKASTHAVNAPRIIADGCASTLSRTDTGHKSDASPKESQSKQICRSRTKVQMQGVAVGRAVDLTMLDGYDQLIHELEDMFDIKGQLKHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSSGSKLPISSVEEGTVISSDTTET* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0616 666 SUPERFAMILY DNA-binding pseudobarrel domain 105 245 IPR015300 -
Apr10g0616 666 Pfam AUX/IAA family 599 639 IPR033389 -
Apr10g0616 666 Pfam AUX/IAA family 444 591 IPR033389 -
Apr10g0616 666 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Apr10g0616 666 Gene3D - 277 352 - -
Apr10g0616 666 ProSiteProfiles PB1 domain profile. 555 636 IPR000270 GO:0005515
Apr10g0616 666 SMART B3_2 116 218 IPR003340 GO:0003677
Apr10g0616 666 CDD B3_DNA 114 216 IPR003340 GO:0003677
Apr10g0616 666 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr10g0616 666 Gene3D - 550 643 - -
Apr10g0616 666 Pfam B3 DNA binding domain 116 216 IPR003340 GO:0003677
Apr10g0616 666 SUPERFAMILY CAD & PB1 domains 557 631 - -
Apr10g0616 666 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 655 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr10g0616 666 Gene3D - 113 217 IPR015300 -
Apr10g0616 666 PANTHER AUXIN RESPONSE FACTOR 1 655 - -
Apr10g0616 666 MobiDBLite consensus disorder prediction 533 555 - -
Apr10g0616 666 MobiDBLite consensus disorder prediction 352 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0616 Apr-Chr10 14234112 14238846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0616 11 648 B3 DNA Binding Superfamily AT4G23980 59.259 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr10g0616 AUX_IAA 4.1e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0616 K14486 - gmx:100803911 1183.7