Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0598 ATGCAGAATAAGAGTGACTCCACCATGGTGGTTGCAAGTTTTAAGGAGTTGGGTGTGAGTGAGGAGCTTGTTAAGGTCATGGAGGGGATTGGTGGTTTTGTTCCAAGTGAGATTCAATGTGTGGCTATTCCAGCTATTTTAGAAGGGAAGAGTTTGTTGTTGAGTTCACCATCTGAACCTGACAGGACTTTGGCCTTCTTGTTGCCCTTTATTCAGGATGGAGAATTGCATAGTTTGAATTTGAAGCATCCACGAGCCATTGTGCTTTGTGCTACAGAGGAGAAAGCTTTACAGTGCTTTAATGCTGCAAGATATATCATCCATAATGCGGAGTTTATCTCTGCAAAGGATTGTGCTTCACCAGATAATGGGCAGTCAGATCCCTCAATTGGCCTCATGATTGGAACTCCTTGTGAGATTCTTCAGTACATTGAAGAGGGGAGTATTGTTCCTGCTGAAATACAATACTTGGTTTTGGATGATACGGATTGCATGCTTGGTAGTGGCCTTGGTCCTAAAATTTATAAAATTCTCAGACCGTTGCAAGATCATGAATCAAAATCCACTGTCAAAAGATTGCAAACTATCCTGGCAATTTCAACAATAGCTGAGGTTTTGGGTGAACAATCCCCCCTTGTAAAGCATCTTGAGCATGATCATGCAGGAAATATTTCTGCAATGTCTTTAGAGATGGAGCAAACAGAAGTCTTTCATTTCACAGAATCTCTGGATGCTCTTAGGAAAAAAGTGGCTGAGGCCATGGATTCCCTTTTGAAATAA 780 0.4154 MQNKSDSTMVVASFKELGVSEELVKVMEGIGGFVPSEIQCVAIPAILEGKSLLLSSPSEPDRTLAFLLPFIQDGELHSLNLKHPRAIVLCATEEKALQCFNAARYIIHNAEFISAKDCASPDNGQSDPSIGLMIGTPCEILQYIEEGSIVPAEIQYLVLDDTDCMLGSGLGPKIYKILRPLQDHESKSTVKRLQTILAISTIAEVLGEQSPLVKHLEHDHAGNISAMSLEMEQTEVFHFTESLDALRKKVAEAMDSLLK* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0598 259 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 1 259 - -
Apr10g0598 259 SMART poly_2 198 259 IPR002004 GO:0003723
Apr10g0598 259 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 259 - -
Apr10g0598 259 Gene3D - 1 207 IPR027417 -
Apr10g0598 259 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 43 220 IPR014001 -
Apr10g0598 259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 198 IPR027417 -
Apr10g0598 259 SUPERFAMILY PABC (PABP) domain 204 255 IPR036053 GO:0003723
Apr10g0598 259 Pfam DEAD/DEAH box helicase 37 198 IPR011545 GO:0003676|GO:0005524
Apr10g0598 259 Gene3D - 208 259 - -
Apr10g0598 259 Pfam Poly-adenylate binding protein, unique domain 211 255 IPR002004 GO:0003723
Apr10g0598 259 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 146 259 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0598 Apr-Chr10 13513458 13516075 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0598 11 181 Eukaryotic Initiation Factors Gene Family AT3G19760 26.705 2.23e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0598 - - aprc:113851459 508.064