Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0594 ATGGCGGGAGCTACAGGAAGAACCCTCTTCACTCTCTCGCTCTCCTCTTCTTCCTCCTTCACACGCCTCTCCCACCTCGCGAGGCATTTCCCAGTCTCCAACCCCGTCGGCCTTTTCCCACGCTTCAGGCCTCTCTGCTCCGTCACCGCGGCACCTGAAACCACAGACCCTACCCAATTGAAGCACTCTATACTCCTTGAGAGGCTCAGAATCAGACACCTCAAGGACACTGCCAAAGCCCCAGAGGAACCCAAAAAGCCCCTGAAGAAGAAGGCAAAGGGTGTTTCTTCGTCTGATGCAGATAATGAGACGATGGTTATGAAGAAGAAGTTAGTTGGGAGTTTTGAGGAGTTAGGAGTGAGTGAAGAGGTTATGGGGGCTGTTAGAGAAATGGGTATTGAAGTTCCCACTGAGATACAGTGTATTGGTGTCCCTGCTGTGTTGGACGAAAATAGTGTGGTTTTGGGGTCTCATACTGGCTCGGGTAAAACCCTCGCCTACTTGCTTCCCCTTGTTCAGTTGCTGAGACGGGATGAACAAATGAATGGAATACTGTTGAAGCCCCGACGTCCCCGAGCTGTTGTGCTTTGTCCAACAAGGGAGTTGTCTGAGCAGGTTTTTCGAGTAGCAAAATCGATAAGTCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGGCTTAGGCCTCAAGAGGATTCACTTAATAACCCCATCGATATGGTAGTTGGTACCCCTGGCAGGATTCTTCAACATATTGAAGATGGCAATATGGTATTGGATGAAGCAGACACAATGTTTGATCGGGGATTTGGTCCTGATATACGCAAATTTCTGGGCCCATTAAAAAATCGCGCTTCAAAATCTGATGGCCTAGGTTTTCAGACTGTCTTGGTTACTGCAACTATGACAAAGGCTGTGCAAAAGCTGATTGATGAAGAGTTTCAAGGCGTTGTACATCTGCGCACATCATCGTTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTATCAAACTTTCAGGTTCTGAGAACAAGCTAGAAGCATTACTTCAGGTACTAGAGCCAAGCCTGGCAAAGGGGAACAAGGTGATGGTTTTCTGCAATACGTTGGATTCCAGTCGTGCTGTGGATCATTTTCTTGGTGAAAATCATATTTCTACTGTGAACTACCATGGGGAGGTACCAGCAGAGCAAAGGGTTGAAAACCTCAGAAAGTTTAAGAGTGATGGTGATGATTGTCCTACATTGGTTTGCACGGATTTGGCTGCTAGGGGTCTGGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCTTTGAACTCTATTGACTACCTTCACCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAGGTAACAAGTTTGGTTGCTAAAAAGGACTTGGTCTTGGCTACCAAAATAGAGGAGGCAATAAGGAAGAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGGCCGAAGGGACGTTGCAAGGACCCAAATCACTGTGCCAAAGGGAAAGAACAAAAAAATGGTTAAAGTTTCACAAGTAAAGAACAAATCTGCTGGCGGTTCAAGGAAAAACGGGTCAAGTATGAAGCCTGGTAAAGGATCACCCTCTGTAAAATCTATGAAAAAAGGGATTAGCGTTTCAAAATCTGTAAAATTTTCCGGTGCAAGTGGCTTGAGAAAAGATTCTTTGGAGAACGAACAAACAAGTAAAAGGGTCAGTGCCACCAAATCTACAAATTCTAAACTCAGTGTTGTGGGGTTTAGGGGGAGGAATTCATCATCTTTGTGA 1815 0.4567 MAGATGRTLFTLSLSSSSSFTRLSHLARHFPVSNPVGLFPRFRPLCSVTAAPETTDPTQLKHSILLERLRIRHLKDTAKAPEEPKKPLKKKAKGVSSSDADNETMVMKKKLVGSFEELGVSEEVMGAVREMGIEVPTEIQCIGVPAVLDENSVVLGSHTGSGKTLAYLLPLVQLLRRDEQMNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVLDEADTMFDRGFGPDIRKFLGPLKNRASKSDGLGFQTVLVTATMTKAVQKLIDEEFQGVVHLRTSSLHKKISSARHDFIKLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLDSSRAVDHFLGENHISTVNYHGEVPAEQRVENLRKFKSDGDDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLVLATKIEEAIRKNESLEAITKESGRRDVARTQITVPKGKNKKMVKVSQVKNKSAGGSRKNGSSMKPGKGSPSVKSMKKGISVSKSVKFSGASGLRKDSLENEQTSKRVSATKSTNSKLSVVGFRGRNSSSL* 605
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0594 604 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 35 535 - -
Apr10g0594 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 476 IPR027417 -
Apr10g0594 604 Gene3D - 75 324 IPR027417 -
Apr10g0594 604 SMART ultradead3 132 333 IPR014001 -
Apr10g0594 604 MobiDBLite consensus disorder prediction 523 542 - -
Apr10g0594 604 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 500 IPR001650 -
Apr10g0594 604 MobiDBLite consensus disorder prediction 75 100 - -
Apr10g0594 604 MobiDBLite consensus disorder prediction 577 604 - -
Apr10g0594 604 CDD DEADc 124 324 - -
Apr10g0594 604 Pfam DEAD/DEAH box helicase 137 312 IPR011545 GO:0003676|GO:0005524
Apr10g0594 604 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 35 535 - -
Apr10g0594 604 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 323 IPR014001 -
Apr10g0594 604 Pfam Helicase conserved C-terminal domain 348 459 IPR001650 -
Apr10g0594 604 Gene3D - 334 502 IPR027417 -
Apr10g0594 604 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Apr10g0594 604 CDD SF2_C_DEAD 336 468 - -
Apr10g0594 604 SMART helicmild6 377 459 IPR001650 -
Apr10g0594 604 MobiDBLite consensus disorder prediction 493 604 - -
Apr10g0594 604 MobiDBLite consensus disorder prediction 75 97 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Apr10g0594 Apr-Chr10 13476456 13488387 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0594 112 481 Eukaryotic Initiation Factors Gene Family AT3G19760 26.753 1.25e-37 142
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0594 - - vun:114182370 891.723