Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0590 ATGAAAAAAGCTATTGAATTAACTGAACAAGCAGGTACAAAAGGAGTGCAAGTACAAATTGCGGGACGTATCGATGGAAAAGAAATTGCACGTATCGAATGGATCAGAGAAGGTAGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTCCTATACAGTTCGAACTATTTATGGGGCACTTGAGCCCGCTTGGATCACGTCTAGACAAATAGAAGCGGGACGGCGAGCAATGTCACGAAATGTCCGACGAGGTGGACAAATATGGGTACGCATATTTCCAGACAAACCAGTTACAGTAAGACCCACCGAAACGCGTATGGGTTCGGGAAAAGGATCTCCCGAATATTGGGTATCTGTCGTTAAACCTGGGAAAATACTTTATGAGATGGCTGATAACAGCGGAGCCCGCGAATTGATGTGTATTCGAATCCTAGGAGCTAGTAATCGACGATATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAGGAAGCAGTACCAAATATGACCTTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAGCAACGGTATACTAATTCAGTATGATGATAATGCTGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATCTTTTGTGCAATCGCACGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCCGAGGTATTATAA 735 0.4095 MKKAIELTEQAGTKGVQVQIAGRIDGKEIARIEWIREGRVPLQTIRAKIDYCSYTVRTIYGALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVSVVKPGKILYEMADNSGARELMCIRILGASNRRYAYIGDIVVAVIKEAVPNMTLERSEVIRAVIVRTCKELKRSNGILIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPEVL* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0590 244 Pfam Ribosomal protein S3, C-terminal domain 1 62 IPR001351 GO:0003735|GO:0006412
Apr10g0590 244 ProSitePatterns Ribosomal protein L16 signature 1. 85 96 IPR020798 GO:0003735|GO:0005840|GO:0006412
Apr10g0590 244 Pfam Ribosomal protein L16p/L10e 62 140 IPR016180 GO:0003735|GO:0005840|GO:0006412
Apr10g0590 244 CDD Ribosomal_L16_L10e 62 132 IPR016180 GO:0003735|GO:0005840|GO:0006412
Apr10g0590 244 PRINTS Ribosomal protein L16 signature 68 79 IPR000114 GO:0003735|GO:0006412|GO:0019843
Apr10g0590 244 PRINTS Ribosomal protein L16 signature 84 113 IPR000114 GO:0003735|GO:0006412|GO:0019843
Apr10g0590 244 PRINTS Ribosomal protein L16 signature 114 143 IPR000114 GO:0003735|GO:0006412|GO:0019843
Apr10g0590 244 ProSitePatterns Ribosomal protein L14 signature. 182 208 IPR019972 -
Apr10g0590 244 Gene3D - 1 64 IPR036419 -
Apr10g0590 244 TIGRFAM rplP_bact: ribosomal protein uL16 47 134 IPR000114 GO:0003735|GO:0006412|GO:0019843
Apr10g0590 244 SUPERFAMILY Ribosomal protein S3 C-terminal domain 1 62 IPR036419 -
Apr10g0590 244 Gene3D Ribosomal protein L14 113 244 IPR036853 GO:0003735|GO:0005840|GO:0006412
Apr10g0590 244 SUPERFAMILY Ribosomal protein L14 132 244 IPR036853 GO:0003735|GO:0005840|GO:0006412
Apr10g0590 244 Hamap 50S ribosomal protein L14 [rplN]. 122 244 IPR000218 GO:0003735|GO:0005840|GO:0006412
Apr10g0590 244 Pfam Ribosomal protein L14p/L23e 131 244 IPR000218 GO:0003735|GO:0005840|GO:0006412
Apr10g0590 244 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 130 242 IPR000218 GO:0003735|GO:0005840|GO:0006412
Apr10g0590 244 ProSitePatterns Ribosomal protein L16 signature 2. 108 119 IPR020798 GO:0003735|GO:0005840|GO:0006412
Apr10g0590 244 SMART Ribosomal_L14_2 128 244 IPR000218 GO:0003735|GO:0005840|GO:0006412
Apr10g0590 244 TIGRFAM rplN_bact: ribosomal protein uL14 131 244 IPR005745 GO:0003735|GO:0006412|GO:0015934
Apr10g0590 244 SUPERFAMILY Ribosomal protein L16p/L10e 62 134 IPR036920 GO:0003735|GO:0005840|GO:0006412
Apr10g0590 244 PANTHER 50S RIBOSOMAL PROTEIN L14, CHLOROPLASTIC 130 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0590 Apr-Chr10 13062466 13064997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0590 111 244 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 31.159 2.00e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0590 K02874 - dct:114579343 263.848