Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0579 ATGGAAGGATTGGATGGGTTTATAGAGAGGCTTTTGGAAGCAAGGAAGAATAGGGGTAGACGAATTCAACTGACAGAGTCAGAAATTCGCACCCTTTGCACCACGGCAAAAGAAGTTTTCCTAAGACAGCCAAATCTGCTGGAATTGGAAGCCCCCATCAACGTTTGCGGCGACATACACGGCCAATATCCAGACCTATTGCGACTGTTTGAGTACGGTGGGTTTCCGCCGGATTCCAATTACCTCTTCCTTGGGGACTACGTGGACAGAGGAAAACAGAGTATAGAAACAATATGCCTCCTACTTGCATACAAGATCAAATTCCCAGAAAACTTTTTCCTTCTCCGAGGAAACCATGAATGTGCCTCTATTAACAGAATTTATGGCTTCTACGACGAATGCAAGCGAAGATTCAGCGTTCGGCTATGGAAGATGTTCACAGATTGCTTCAACTGTTTGCCCGTATCTGCAGTGATTGACGACAAAATTTTATGCATGCACGGAGGTCTTTCCCCTGAGATGGAGAGTTTGGATCAGATAAAGGCTATAGAGAGGCCAGTGGACGTGCCAGACCAAGGGCTCTTATGTGACTTGCTTTGGGCTGATCCTGACAAAGAAATCAGAGGATGGGGTGAGAATGATAGGGGTGTTTCCTACACTTTTGGCCCAGATAAGGTCGCCGAGTTCTTGAAGAAACACGATCTTGATCTTATATGCAGGGCTCATCAGGTTGTTGAAGATGGCTACCAATTCTTCGCAGACAGGCAGTTAGTTACAATTTTCTCAGCCCCAAACTATTGTGGAGAGTTCAATAATGCCGGTGCTCTCATGTGCGTCGATCCAACTTTACTCTGTTCATTTCAGATTCTCAAACCCTTCAAAGGAAGAACCACATAA 897 0.4537 MEGLDGFIERLLEARKNRGRRIQLTESEIRTLCTTAKEVFLRQPNLLELEAPINVCGDIHGQYPDLLRLFEYGGFPPDSNYLFLGDYVDRGKQSIETICLLLAYKIKFPENFFLLRGNHECASINRIYGFYDECKRRFSVRLWKMFTDCFNCLPVSAVIDDKILCMHGGLSPEMESLDQIKAIERPVDVPDQGLLCDLLWADPDKEIRGWGENDRGVSYTFGPDKVAEFLKKHDLDLICRAHQVVEDGYQFFADRQLVTIFSAPNYCGEFNNAGALMCVDPTLLCSFQILKPFKGRTT* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0579 298 CDD MPP_PP1_PPKL 4 292 - -
Apr10g0579 298 SUPERFAMILY Metallo-dependent phosphatases 20 294 IPR029052 -
Apr10g0579 298 ProSitePatterns Serine/threonine specific protein phosphatases signature. 115 120 IPR006186 GO:0016787
Apr10g0579 298 Pfam Calcineurin-like phosphoesterase 52 244 IPR004843 GO:0016787
Apr10g0579 298 Pfam Serine-threonine protein phosphatase N-terminal domain 4 50 IPR031675 -
Apr10g0579 298 PRINTS Serine/threonine phosphatase family signature 52 79 IPR006186 GO:0016787
Apr10g0579 298 PRINTS Serine/threonine phosphatase family signature 81 108 IPR006186 GO:0016787
Apr10g0579 298 PRINTS Serine/threonine phosphatase family signature 114 138 IPR006186 GO:0016787
Apr10g0579 298 PRINTS Serine/threonine phosphatase family signature 148 174 IPR006186 GO:0016787
Apr10g0579 298 PRINTS Serine/threonine phosphatase family signature 177 204 IPR006186 GO:0016787
Apr10g0579 298 PRINTS Serine/threonine phosphatase family signature 234 254 IPR006186 GO:0016787
Apr10g0579 298 PRINTS Serine/threonine phosphatase family signature 256 272 IPR006186 GO:0016787
Apr10g0579 298 Gene3D - 2 297 IPR029052 -
Apr10g0579 298 SMART pp2a_7 24 294 IPR006186 GO:0016787
Apr10g0579 298 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 297 - -
Apr10g0579 298 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0579 Apr-Chr10 12875373 12876366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0579 31 240 Calmodulin-binding Proteins AT5G63870 30.400 4.34e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0579 K06269 - gmx:100804212 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0579 10 12875373 12876366 Apr10g0579 10 12875373 12876366 ECH