Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0576 ATGGGAGGCGAAGGAAGGGGTGCGAAGAAGGAGAAGAAGAAAAAGAAGAATGCGAATTCTGGTGGGTTTGAGTCACTTGGTCTGAATCCTAATGTTTTCAAAGGAATCAAGCGGAAGGGGTACCAAGTGCCGACCCCAATTCAGAGGAAGACAATGCCCCTCATCCTTTCTGGCTCTGACGTGGTTGCCATGGCTCGCACTGGCTCTGGCAAAACGGCTGCGTTTCTTGTCCCCATGATTCATCGCCTCAACCAGCATCTCCCTCAGGGCGGAGTTAGAGCCCTGATTTTATCCCCTACTAGGGACTTGGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTTCGTGTTAGTTTATTAGTCGGCGGTGATAGTATGGAAAGTCAGTTTGAGGAGTTAGCTCAGAGTCCAGACATTATAATTGCCACTCCCGGTAGGCTTATGCACCATCTGTCTGAGGTCGATGACATGTCGTTGCGCAGTGTGGAGTATGTTGTTTTCGACGAGGCTGATTGCTTATTCGGCATGGGTTTTGCCGAGCAGCTGCATCAAATTCTTGCTCAGCTGGGCGAGAACCGTCAGACCTTGCTTTTCAGTGCCACGTTACCCAGTGCGCTTGCTGAATTTGCCAAGGCCGGTTTGAGAGATCCTCAGCTTGTCCGTCTCGATTTGGAAACTAAAATTAGTCCTGATTTGAAGCTTGCCTTTTTCACTATGAGGCAGGAAGAGAAGTATGCGGCCTTGCTGTATTTGATTAGGGAGCATATTGGTCCTGATCAGCAGACATTAATTTTTGTATCAACAAAACATCATGTGGAGTTCCTCAACATTTTGTTTCGTGAAGAGGGTATTGAGCCTTCTGTATGTTATGGTGACATGGATCAAGATGCTCGCAAAATCCATGTATCAAGGTTTAGGGCTCGAAAGACAATGTTGTTGATTGTGACAGACGTTGCGGCTAGGGGTATTGACATTCCATTACTTGATAATGTTATCAATTGGGACTTTCCTCCCAAGCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGTACTGGTACGGCATATTCTTTTGTGACTTCCGAGGATATGGCTTACCTTTTAGATCTTCATCTGTTTCTCTCAAAACCAATCAAAGCTGCTCCCACCGAAGAAGAGGTCTTGCAGGATATGGATGGAGTAATTTCAAGAAATGACCAGGCAATGGCTAATAGAGAAACTATTTATGGTCGTTTCCCCCAAAAAGTCATTGACCTTGTTTCAGACAGAGTTAGGGAAATTATTGATACTTCGGCAGAACTGGAATCGTTGCAGAGAACCTGTAAAAATGCATTTCGTTTATATTCTAAAACAAAACCCTTACCCGCAAAGGAGTCCATCAGGAGAGTAAAGGATTTGCCTCGTGAAGGGCTGCATCCGATGTTCATGAATGTGTTGGAAACGGGGGAGTTAATGGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACCATTTTGGAAGCTGAAGGTGAAGCAGCAAAATCTAAGCACCAGCAGGGCCCTTCTGGCCAATGGGTTGATGTTATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTTCATGAACAGCAATCTAAGATTACTAAGGAAAAGGAAAAGGAAAAGGAGGAAATTCAATCAGAAATCACTTCTTTTGTGGAGAAAGGAAGAAAAGCAGCATGTGGTTCTAAGAGAAAGCCACAAAGTTTCAAGGATGAGGATCACTATATAAGTTCAATACCAAAAAATCAACACATGGAGGCAGGCCTTTCAGTAAAAGCTAATGAAGACTTCGCGTCAAATAGATTGGATGCAGCTGTCTTAGATTTAGTAGCGGATGATGGTGCTGGCATTAAGAAACAAAGATCAATGTATCATTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGACCGGGTTGCAGCTAATGGAAAGATCAAGACAGAGAGTGGTGCGAAAACGAAGGCCACCAAGACTGGTATTTATAAGAAGTGGAAAGAACGCTCGCACAGTAAGGTATCTCTTAAAGGGGCAAATAATGATGGTGATCCTCAGGAACCAACAAGTTTGGCAGGATCTTACCGAGGAGGTCGTAGGAACTTTAAAGGCAGCAAGAAGCAGCATTTGATGCCCAATTCCCATGTGCGTTCTGAAATCAAAGATATGGATCAAATTCGGAAGGAGAGGCAGAAAAAAGCCAACAGGATTTCTTATGTAAAGAGCAAGTCGACAAAGGGTAAAAAATTTGGCAAAAATGGTAAAAGAAGAAAAGGCAGGTAG 2355 0.4378 MGGEGRGAKKEKKKKKNANSGGFESLGLNPNVFKGIKRKGYQVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMIHRLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTMRQEEKYAALLYLIREHIGPDQQTLIFVSTKHHVEFLNILFREEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMAYLLDLHLFLSKPIKAAPTEEEVLQDMDGVISRNDQAMANRETIYGRFPQKVIDLVSDRVREIIDTSAELESLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPREGLHPMFMNVLETGELMALAFSEHLKKFRPKQTILEAEGEAAKSKHQQGPSGQWVDVMKRKRAIHENIINLVHEQQSKITKEKEKEKEEIQSEITSFVEKGRKAACGSKRKPQSFKDEDHYISSIPKNQHMEAGLSVKANEDFASNRLDAAVLDLVADDGAGIKKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGIYKKWKERSHSKVSLKGANNDGDPQEPTSLAGSYRGGRRNFKGSKKQHLMPNSHVRSEIKDMDQIRKERQKKANRISYVKSKSTKGKKFGKNGKRRKGR* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0576 784 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 8 781 - -
Apr10g0576 784 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 8 781 - -
Apr10g0576 784 MobiDBLite consensus disorder prediction 692 784 - -
Apr10g0576 784 MobiDBLite consensus disorder prediction 736 760 - -
Apr10g0576 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 377 IPR027417 -
Apr10g0576 784 SMART helicmild6 278 359 IPR001650 -
Apr10g0576 784 MobiDBLite consensus disorder prediction 1 23 - -
Apr10g0576 784 CDD DEADc_DDX54 21 226 - -
Apr10g0576 784 MobiDBLite consensus disorder prediction 761 784 - -
Apr10g0576 784 Gene3D - 240 467 IPR027417 -
Apr10g0576 784 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 398 IPR001650 -
Apr10g0576 784 SMART ultradead3 40 240 IPR014001 -
Apr10g0576 784 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 21 49 IPR014014 GO:0003724
Apr10g0576 784 CDD SF2_C_DEAD 247 368 - -
Apr10g0576 784 Pfam DEAD/DEAH box helicase 45 212 IPR011545 GO:0003676|GO:0005524
Apr10g0576 784 Coils Coil 550 577 - -
Apr10g0576 784 Gene3D - 4 228 IPR027417 -
Apr10g0576 784 Pfam DBP10CT (NUC160) domain 631 692 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Apr10g0576 784 Pfam Helicase conserved C-terminal domain 249 359 IPR001650 -
Apr10g0576 784 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 225 IPR014001 -
Apr10g0576 784 SMART DBP10CT_2 631 693 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0576 Apr-Chr10 12854606 12861920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0576 23 392 Eukaryotic Initiation Factors Gene Family AT1G72730 32.258 2.14e-58 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0576 K14808 - gmx:100806274 1358.97