Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0560 ATGAATGTGATAATGGCTTCTCTGCTCCCTCCAACTCCAACTGCTACTTGTACACTTAAACAAAGTCAAATGGGAATTTGCTTCTCTCCCTTGAAACCCACCACCTCAAATAATGTTTCTTTCTTATCAAACCAGCGCTTCAAGAGCAACTCTTCACAGTGTAATGCATTTTATGATGATGTGGCCAAAGGTTTGTTGGAGGGCAGTGTTAGTTTGGAGCAGTTTGCTGGTTTTCTCCAATCAGGAAAAGTGCAATTTGAGAGAGTAACTGAAAATTTATCAGAGATGCAGAAGTGGGGGTTTCTCATGTTTGGTGGGTTGACATGGATTTACTTAACTGCAAGGCCAGGTGTTCTTGTTGGTGCCATTGATGCCTACCTTTTGGCTCCTCTTCAACTTGGTTTGGACAGTTTATCTGGAAGGAGAAACTTGAAGAGGAGTGATTTTCTGATTGGTGATAAGCTTGGTGAAGGGTCATTTGGTGTTGTCTATTCGGGTGTTTTGGTCCCAAAGAATGTGAATGTGAATGTGGAAGAGAGGGTGCAGAAGAGGGGGAGAGCTAAGGCATCACAGTTGGATGCCAAATCTACGGATAAAGTCATTCTTAAAAAGGTTAAGGTTGGAATCCAAGGGGCTGAAGAATTTGGTGATTATGAGGAGTGGTTCAATTACAGGATATCTAGAGCAGCACCTGAAACATCTGCCGAGTTCCTTGGCAGTTTTGTAGCTGATAAAACAAATACACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGATCGTACTCTTGCTGATTACATGAAGGATCGCAACTTTCCTTCAAACTTAGAATCTGTCATGTTTGGACGTGTCTTGCAAGGTGTAGACTCTTTGAAACGAAATGCTTTGATCATCAAGCAAATAATGCGCCAGATCATTACGTCTCTTAGGAAAATTCATGATACAGGCATTGTTCACAGGGATGTAAAGCCAGCCAACTTAGTGGTTACTAAAAGGGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTGCGGATTGGCAAGAATTATGTTGCCAACGTCACCCTTTTTGATCCTGACTATTGCCCCCCAGAATTATATGTACTCCCAGAAGAAACTCCAAGTCCTCCACCAGAACCAATTGCTGCTTTCCTTTCACCAATCCTGTGGCAGTTAAACAGCCCTGATTTGTTTGATATGTATTCGGCTGGGATTGTTCTCCTGCAAATGGCAATACCAACCTTAAGGTCTCAAGCTGCTTTGAAGAATTTCAACCTGGAAATTAAAACCTGCGGATATGATTTGAAAAAATGGAGGGACTATACTCGCCTCAGGCCTGGCGACTTCCAAATTCTAGATATCGAATCTGGGAGAGGGTGGGACTTAGCAACAAAGCTTGTATCTGAGAGAGGTTCCATTAGAAGAGGACGTTTATCTGCTGCTGCTGCTTTGAGACATCCTTATTTTCTTCTGGGTGGTGATCAGGCAGCTGCAGTCCTTTCAAAATTAAGCTTAAGCAGAAAGTGA 1545 0.4265 MNVIMASLLPPTPTATCTLKQSQMGICFSPLKPTTSNNVSFLSNQRFKSNSSQCNAFYDDVAKGLLEGSVSLEQFAGFLQSGKVQFERVTENLSEMQKWGFLMFGGLTWIYLTARPGVLVGAIDAYLLAPLQLGLDSLSGRRNLKRSDFLIGDKLGEGSFGVVYSGVLVPKNVNVNVEERVQKRGRAKASQLDAKSTDKVILKKVKVGIQGAEEFGDYEEWFNYRISRAAPETSAEFLGSFVADKTNTQFTKGGKWLVWKFEGDRTLADYMKDRNFPSNLESVMFGRVLQGVDSLKRNALIIKQIMRQIITSLRKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVANVTLFDPDYCPPELYVLPEETPSPPPEPIAAFLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSQAALKNFNLEIKTCGYDLKKWRDYTRLRPGDFQILDIESGRGWDLATKLVSERGSIRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLSRK* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0560 514 Gene3D Transferase(Phosphotransferase) domain 1 291 497 - -
Apr10g0560 514 Pfam Protein kinase domain 301 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g0560 514 SUPERFAMILY Protein kinase-like (PK-like) 145 496 IPR011009 -
Apr10g0560 514 SMART serkin_6 149 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g0560 514 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 3 512 - -
Apr10g0560 514 ProSiteProfiles Protein kinase domain profile. 149 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g0560 514 Gene3D Phosphorylase Kinase; domain 1 136 261 - -
Apr10g0560 514 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 3 512 IPR044803 GO:0004674|GO:0009579
Apr10g0560 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0560 Apr-Chr10 12725390 12729525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0560 149 350 MAP Kinase Kinase Kinase AT3G13530 24.878 1.73e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Apr10g0560 Pkinase 7.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0560 - - gmx:100788727 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0560 10 12725390 12729525 Apr10g0560 10 12725390 12729525 ECH