Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0557 ATGGTGCTGATAGAGCAGCAAGAGTGCGAGGATCCAAACCCCAAACCCTCCAACGCCGCCGATGCCACCAATGACGCTTCCGACGGCTTCGAAACCGCCAGCGACGCCGATCTCGACAACGACGCCGAAGGCGGCGGAGCTAGCATCCGGGAAGAACAGCATCATCCCTCGGAATGCCAACATCAACCGCAGGCAGAGCAAGAGCAGGAGCAGGGTGTTCCTGGGAGCAGCGAGTCCTCCGAAAATGCCTTGATCAACGAGGAGGAATTGAAACAGAAAGCATTGGTTGAAGCAAATGAAGCGAAGGTAGAAGGTAACAAATTTTTTGTAGATGGGAAGTATGAAGAGGCGTTATCACAATATGAGCTTGCTTTACAAGCTGCACCAGACATGCCTTCCGCCGTGGAATTACGCTCAATATGCCATGCAAATCGTGCTGTGTGCTTTCTCAAACTCGGAAAATATGAAAACACAATTAAAGAATGTACAAAAGCATTAGAATTGAATCCTGTGTACGTTAAAGCCTTGGTGAGAAGAGGAGAGGCTCATGAAAAGCTTGAGCACTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGAAAAACCATTCGGCGACTGGAGCCAGTTGCTGCAGAAAAACGGGAAAAGATGAAGGAAGAAATGATTGGGAAACTGAAAGACATGGGTAATTCTGTCTTGGGCCGCTTTGGGATGAGCATAGACAACTTTAAAGCAGTCAAAGATCCGAACACCGGTTCCTATTCCATCTCATTCCAGCGTTAA 813 0.4723 MVLIEQQECEDPNPKPSNAADATNDASDGFETASDADLDNDAEGGGASIREEQHHPSECQHQPQAEQEQEQGVPGSSESSENALINEEELKQKALVEANEAKVEGNKFFVDGKYEEALSQYELALQAAPDMPSAVELRSICHANRAVCFLKLGKYENTIKECTKALELNPVYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKTIRRLEPVAAEKREKMKEEMIGKLKDMGNSVLGRFGMSIDNFKAVKDPNTGSYSISFQR* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0557 270 Gene3D Tetratricopeptide repeat domain 57 234 IPR011990 GO:0005515
Apr10g0557 270 ProSiteProfiles TPR repeat profile. 98 131 IPR019734 GO:0005515
Apr10g0557 270 Pfam Tetratricopeptide repeat 174 206 IPR013105 -
Apr10g0557 270 Coils Coil 84 104 - -
Apr10g0557 270 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 15 270 - -
Apr10g0557 270 MobiDBLite consensus disorder prediction 62 82 - -
Apr10g0557 270 MobiDBLite consensus disorder prediction 1 82 - -
Apr10g0557 270 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 15 270 - -
Apr10g0557 270 MobiDBLite consensus disorder prediction 44 61 - -
Apr10g0557 270 MobiDBLite consensus disorder prediction 11 30 - -
Apr10g0557 270 SUPERFAMILY TPR-like 98 216 IPR011990 GO:0005515
Apr10g0557 270 ProSiteProfiles TPR repeat profile. 173 206 IPR019734 GO:0005515
Apr10g0557 270 SMART tpr_5 98 131 IPR019734 GO:0005515
Apr10g0557 270 SMART tpr_5 173 206 IPR019734 GO:0005515
Apr10g0557 270 SMART tpr_5 139 172 IPR019734 GO:0005515
Apr10g0557 270 Pfam Tetratricopeptide repeat 141 170 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0557 Apr-Chr10 12693463 12697274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0557 98 229 Calmodulin-binding Proteins AT3G25230 39.286 8.50e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0557 K24926 - gmx:100808386 397.127