Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0550 ATGGAAATGTTCGGCGATTCCCTTTCAAGTTTCTCTCCCGTAGACTTCACCACCACAGACCCAAATTATCTCTTTTCTGATTTCGAATGGCTCGCCCAAATGGTCAACGAGGCCACCGATCCCATTCAACAATCATCGTCGTCGTCGTCGTCCACCACCCCCAACACCAACCCCCAACCCCAAGAGGCAGGGGTCCGAAAGTGCACCCACTGCGCCTCCGAGAAGACGCCTCAGTGGAGAACTGGACCGCTGGGGCCCAAAACCCTCTGCAACGCTTGCGGGGTTCGCTTCAAGTCGGGTCGCCTCGTACCCGAATATCGACCCGCCGCCAGCCCGACTTTCGTCCTCTCTCAGCACTCTAACTCTCACCGCAAGGTCATGGAGCTCCGTCGCCAGAAGCACCTCCTCCGCCAACAACTTTCCTGA 426 0.5751 MEMFGDSLSSFSPVDFTTTDPNYLFSDFEWLAQMVNEATDPIQQSSSSSSSTTPNTNPQPQEAGVRKCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLSQHSNSHRKVMELRRQKHLLRQQLS* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0550 141 ProSitePatterns GATA-type zinc finger domain. 68 93 IPR000679 GO:0006355|GO:0043565
Apr10g0550 141 MobiDBLite consensus disorder prediction 36 67 - -
Apr10g0550 141 SMART GATA_3 62 112 IPR000679 GO:0006355|GO:0043565
Apr10g0550 141 CDD ZnF_GATA 67 114 IPR000679 GO:0006355|GO:0043565
Apr10g0550 141 ProSiteProfiles GATA-type zinc finger domain profile. 62 98 IPR000679 GO:0006355|GO:0043565
Apr10g0550 141 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 66 126 - -
Apr10g0550 141 MobiDBLite consensus disorder prediction 37 63 - -
Apr10g0550 141 Gene3D - 59 137 IPR013088 GO:0006355|GO:0008270
Apr10g0550 141 PANTHER GATA TRANSCRIPTION FACTOR 2 43 138 - -
Apr10g0550 141 PANTHER GATA TRANSCRIPTION FACTOR 43 138 - -
Apr10g0550 141 Pfam GATA zinc finger 68 101 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0550 Apr-Chr10 12635965 12636479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0550 47 138 C2C2-Gata Transcription Factor Family AT2G45050 80.435 2.15e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr10g0550 GATA 5.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0550 - - aprc:113851484 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0550 10 12635965 12636479 Apr10g0550 10 12635965 12636479 ECH