Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0542 ATGTTGGAATACGAATGGGGAAACCCATCAACGATAATGCTCACCGGAAATGAAGATGGCGCCGCCGCAGCCGCCGACCAAACCCACCGTCAAATCTTCGACCACTACGCTTCTCACACCCTCTTGCCCGACCACTTCCTACATGGGCCCACGCACACTACCGCCCACACAAACACCGTCGATTTCACCAACCACCACTTCAACCCACAACCTCACCAACACCTTCACCACCACCACCACCCCTTTTTCGATCCACGCGCCTTCCACGGCGCGTCCTCCACCTCCTACCCCCCTCCCCAACCCCCACCCCCTTCCGTGCTCTCCCTTGACCCGCTGCCTCACGTCAACGCAGCCACATGTGGGCCTGGACCTGGGCCGGGCCTTCTCCTCGTGCCTAAATCCGAGGAAGTCGGTCGGCCCATGGACTTTGTCGGCTCACGAATTGGCCTCAACCTGGGAGGACGAACTTACTTCTCATCCTCCGAGGATGACTTCGTGAGCCGACTCTACCGTCGGTCTAGACCGGCCGAACCCGGTTCGACCGCGTCGAACTCACCGCGGTGCCAGGCCGAGGGATGCAATGCTGATCTGTCGCAGGCGAAGCACTACCACCGCCGCCACAAGGTGTGTGAGTATCACTCCAAGGCCGCCACGGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGCAGCTGCAGGAAGAGATTGGCAGATCATAATCGCCGCCGAAGAAAAACTCAGCAGCCAACTCAAGAAATCCCGAAATCTCAGCCTTCTTTGGATAATGTTGCAAGGTCCCCACCGGACTCTGGAGCTCAGTCGTCGTCGTCGGTGACGGTGGCAGTGTCGCCGCCGGATTACTTCCGGCAAAGGCCATACCAAAGCACGAGCCCTTCAACAACTTCAAGCTCACTGTTTTTCTCAAGCGGGTAG 981 0.5821 MLEYEWGNPSTIMLTGNEDGAAAAADQTHRQIFDHYASHTLLPDHFLHGPTHTTAHTNTVDFTNHHFNPQPHQHLHHHHHPFFDPRAFHGASSTSYPPPQPPPPSVLSLDPLPHVNAATCGPGPGPGLLLVPKSEEVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEPGSTASNSPRCQAEGCNADLSQAKHYHRRHKVCEYHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQEIPKSQPSLDNVARSPPDSGAQSSSSVTVAVSPPDYFRQRPYQSTSPSTTSSSLFFSSG* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0542 326 MobiDBLite consensus disorder prediction 95 109 - -
Apr10g0542 326 MobiDBLite consensus disorder prediction 68 110 - -
Apr10g0542 326 Pfam SBP domain 188 261 IPR004333 GO:0003677
Apr10g0542 326 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 97 310 - -
Apr10g0542 326 MobiDBLite consensus disorder prediction 251 326 - -
Apr10g0542 326 ProSiteProfiles Zinc finger SBP-type profile. 185 262 IPR004333 GO:0003677
Apr10g0542 326 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 97 310 IPR044817 GO:0003677
Apr10g0542 326 MobiDBLite consensus disorder prediction 266 326 - -
Apr10g0542 326 Gene3D - 179 249 IPR036893 GO:0003677|GO:0005634
Apr10g0542 326 SUPERFAMILY SBT domain 186 266 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0542 Apr-Chr10 12505333 12508164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0542 1 235 SBP-box Gene Family AT1G02065 43.725 1.41e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr10g0542 SBP 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0542 - - gmx:100778566 489.96