Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0522 ATGCATGGAAAAAGAGAGCAAGAAGAATATATAAGGAAAGGGCCATGGAAAGCCGAAGAAGATGAGGTGCTACTGAACCACGTTAAGAAGTATGGCCCCAGAGATTGGAGCTCCATTCGATCCAAAGGCCTTCTTCAAAGGACTGGCAAGTCTTGTCGACTTCGTTGGGTCAATAAGCTCCGACCAAACCTCAAAAATGGGTGCAAGTTTTCAGTAGACGAAGAGAGGGTTGTCATAGAGTTGCAGGCACAATTTGGGAACAGGTGGGCTAAGATTGCATCCTACTTGCCAGGAAGAACAGACAATGATGTAAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCTAGGATTCTTCATTCATCAGCAACAACCCCCAAATCACAGAAAAATAAAACAAAAGTTCCTACCTTTCTTGATATTCCAACTTTGGAGGCTCCTAAGTTCTGTTCATCATCAGAGGGAGAACCATCATCAAAGCCTCAGCCATGCTCATTACCCTGCATTGATAATTCCGAGGTTATAAAAATGGTGCACTTACCAGATCTCATAAAATCTGAGTTGCCTAGTTCTGACACTAGCCATTTTGAACAAGAGTTTACCCTTTATGAGAGCTATAAAAGCACGGAATACATTGCATTCCCTCAGATTCCAGAACTTCAGAATGATCATACATTCTCAATGGGAAGCCAAGATTCCTATGCCAGAATTGATGAGCCAAGTTTTATTGAAGACTTTGGACCTCTTGATGCATCTGAGTATGGAATAGATCCACAACATGCAATTGGGTTGCCTTTCTTTGATCCTTCAGGAAGTTGCAGAATTGGGACAATGGACACAATTGATAGCTCCAAAAACAGTGACAGCTTCTTCGATGACTTACCTGTTGACATGTTTGACCACATGGAGCCACCTGCAAGCCGCTCAAAGCTTTGA 936 0.4263 MHGKREQEEYIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSVDEERVVIELQAQFGNRWAKIASYLPGRTDNDVKNFWSSRQKRLARILHSSATTPKSQKNKTKVPTFLDIPTLEAPKFCSSSEGEPSSKPQPCSLPCIDNSEVIKMVHLPDLIKSELPSSDTSHFEQEFTLYESYKSTEYIAFPQIPELQNDHTFSMGSQDSYARIDEPSFIEDFGPLDASEYGIDPQHAIGLPFFDPSGSCRIGTMDTIDSSKNSDSFFDDLPVDMFDHMEPPASRSKL* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0522 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Apr10g0522 311 Pfam Myb-like DNA-binding domain 16 66 - -
Apr10g0522 311 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr10g0522 311 SMART sant 12 62 IPR001005 -
Apr10g0522 311 SMART sant 66 114 IPR001005 -
Apr10g0522 311 PANTHER TRANSCRIPTION FACTOR DUO1 1 309 - -
Apr10g0522 311 PANTHER TRANSCRIPTION FACTOR DUO1 1 309 - -
Apr10g0522 311 CDD SANT 69 108 IPR001005 -
Apr10g0522 311 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Apr10g0522 311 CDD SANT 15 60 IPR001005 -
Apr10g0522 311 Gene3D - 68 137 - -
Apr10g0522 311 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Apr10g0522 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Apr10g0522 311 Pfam Myb-like DNA-binding domain 69 108 IPR001005 -
Apr10g0522 311 Gene3D - 13 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0522 Apr-Chr10 12244699 12246472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0522 1 304 MYB Transcription Factor Family AT3G60460 49.206 5.84e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr10g0522 Myb_DNA-bind_6 4.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0522 K09422 - gmx:100805384 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0522 10 12244699 12246472 Apr10g0522 10 12244699 12246472 ECH