Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0513 ATGGGTGAGAATCATGATGATGGGTTGGGTTTGGGGTTGAGTTTGAGCTTGGGATTTGGAGAAAATGCAAGTAATCAGCCCAATTTCAACATGCACAAACCTCCTCAATCTGTTCCAAACCAAAGGGCTTCCCTCAGTAACTTGTTCCATTTTCATGATCGGAGCGCCGAGACGAGGTCGTTTCTCCGCGGAATAGACGTGAACTCGGCGGCTACGGCGGCGCCTGTGGCATGCGACGACGAGAACGGGGTTTCGTCGCCGAACAGCACGATATCGAGCATCAGCGGGAAGCGGTGTGAGAGAGAGGGCAATGGAGACGAGAACGAGAGAGCGTCGTGTTCTCGCGGCGGAAGCGAAGACGATGATGGAGGAGGATGCGGCGGAGACGGAGACGGTGACGGAGACACATCGAGGAAGAAGCTGAGGTTGTCGAAGGAACAAGCCATGGTGCTGGAAGAGACTTTCAAGGAGCACAACACTTTGAATCCGAAACAAAAGCAAGCATTGGCAAAGCAGTTGAATCTGATGCCCAGACAGGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAGCAAACTGAAGTGGATTGTGAATACTTGAAGAGGTGCTGTGAAAATCTAACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAACTATCCCCTCAGCTCTACATGCACATGAACCCTCCCACCACTCTAACAATGTGTCCTTCATGTGAGCGAGTTGCTGTCTCATCTACATCCTCCTCCTCAGCCACCATGCCCTCTTCCCCGGCTCTGGTGAATCGCAACCCGCTAGGCCCTACCATCCAGCGGCCGGTGCCGGTAAACCCTTGGGCAGCAATGTCGATTCAACACCGAACCCGGCCATAA 903 0.526 MGENHDDGLGLGLSLSLGFGENASNQPNFNMHKPPQSVPNQRASLSNLFHFHDRSAETRSFLRGIDVNSAATAAPVACDDENGVSSPNSTISSISGKRCEREGNGDENERASCSRGGSEDDDGGGCGGDGDGDGDTSRKKLRLSKEQAMVLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSTSSSSATMPSSPALVNRNPLGPTIQRPVPVNPWAAMSIQHRTRP* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0513 300 PANTHER - 8 294 - -
Apr10g0513 300 MobiDBLite consensus disorder prediction 82 97 - -
Apr10g0513 300 SMART HOX_1 136 198 IPR001356 GO:0003677
Apr10g0513 300 MobiDBLite consensus disorder prediction 99 117 - -
Apr10g0513 300 Pfam HD-ZIP protein N terminus 4 102 IPR006712 GO:0005634
Apr10g0513 300 CDD homeodomain 138 195 IPR001356 GO:0003677
Apr10g0513 300 Gene3D - 142 192 - -
Apr10g0513 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 8 294 - -
Apr10g0513 300 Coils Coil 200 230 - -
Apr10g0513 300 Pfam Homeobox associated leucine zipper 194 228 IPR003106 GO:0006355|GO:0043565
Apr10g0513 300 Pfam Homeodomain 138 192 IPR001356 GO:0003677
Apr10g0513 300 MobiDBLite consensus disorder prediction 257 274 - -
Apr10g0513 300 MobiDBLite consensus disorder prediction 257 279 - -
Apr10g0513 300 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981|GO:0006355
Apr10g0513 300 MobiDBLite consensus disorder prediction 78 139 - -
Apr10g0513 300 SUPERFAMILY Homeodomain-like 125 195 IPR009057 -
Apr10g0513 300 SMART halz 194 237 IPR003106 GO:0006355|GO:0043565
Apr10g0513 300 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0513 Apr-Chr10 12179138 12182277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0513 26 297 Homeobox Transcription Factor Family AT3G60390 61.888 4.21e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr10g0513 HD-ZIP_N 7.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0513 K09338 - gmx:100798480 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0513 10 12179138 12182277 Apr10g0513 10 12179138 12182277 ECH
Apr10g0513 10 12179138 12182277 Apr4g2409 4 33045766 33048444 PCT