Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0502 ATGGTAGAAGGGTCCATGGAGCTTGAGGCTATTATAAAGGAAGCTGTTGATCTGGAAAACATTCCTCTTGAGGAGGTCTTTGATAATCTTAAATGCACAAGAGAAGGTTTAAGCTCAGAGCAAGTACAAGAGAGGCATGCCTTGTTTGGATACAACAAGCTTGAAGAAAAGAAGGAAAGTAAGATATTGAAGTTTTTGGGCTTTATGTGGAATCCTCTGTCATGGGTTATGGAAGCTGCTGCTATCATGGCCATAGCTATGGCACATGGAGGGAATGAAAGATCAGATTACCAAGATTTTATTGGCATAGTTCTTTTGCTAATTATAAACTCCACCATCAGTTTCATAGAAGAAAACAATGCTGGTAATGCAGCTGCTGCCCTTATGGCAAGATTGGCCCCAAAAACAAAGGTACTCCGTGATGGAAAATGGAGTGAAGAAGATGCTTCAGTGTTGGTTCCTGGAGACATAGTTAGCATCAAGTTGGGTGACATCATTCCCGCTGATGCACGTCTCCTTGAAGGAGATCCTTTGAAGATTGATCAGTCTGCTCTTACTGGAGAGTCACTTCCTGTAACAAAACATCCTGGAGAAGGAGTATATTCAGGTTCAACTTGCAAGCAAGGAGAAATTGAGGCAGTAGTTATTGCTACCGGAGTTCACACTTTTTTTGGAAAGGCAGCTCATCTTGTGGAAAATACAACACATGTTGGACATTTCCAGAAGGTTCTAACATCTATTGGGAATTTCTGCATTTGCTCAATTGCTGTTGGTATGATTATTGAAATCATTGTGATATATGGGATCCATGGAAGGAAATACCGAGTTGGTATCGATAACCTCCTTGTGCTACTAATTGGTGGCATCCCTATTGCAATGCCAACTGTCCTTTCTGTTACAATGGCCATTGGTTCACATAAGTTATCTCAGCAGGGTGCTATAACAAAGAGAATGACTGCCATTGAAGAAATGGCTGGAATGGATGTGTTATGCAGTGACAAAACTGGGACATTGACTCTGAACAAGCTTACAGTGGACAAGAATTTGATTGAGGTTTTTGCCAATGGTGTTGACAAAGACATGGTTGTACTTATGGCTGCAAGAGCATCAAGGCTAGAGAACCAGGATGCAATTGATTGTGCAATCGTTTCAATGTTGGCAGACCCAAAGGAGGCACGTGCTGGAATAAAAGAAGTTCACTTCCTTCCGTTCAATCCAACCGATAAAAGAACTGCACTGACATACCTTGATCATGCTGGTAAGATGCACAGGGTTAGCAAAGGTGCACCAGAGCAGATTCTCAATCTTTCACGTAACAAATCAGAAATCCATCAGAGAGTTCATGCAATTATTGACAAGTTTGCAGAGCGTGGACTTCGTTCTCTTGCAGTTGCCCGCCAGGAAGTACCTGAGGGAACTAAGAACAGTCCAGGAGGACCATGGGAGTTTGTTGGCCTTCTCCCTCTTTTTGACCCTCCTCGCCATGATAGTGCAGAAACAATCAAAAGAGCTCTTGATCTGGGTGTGAGTGTCAAAATGATCACTGGTGATCAACTTGCAATAGGTAAGGAAACAGGAAGGCGTCTAGGGATGGGAACTAACATGTATCCTTCTTCATCACTGCTTAGTGAAAATAATGAATTGGGTGCAGTCTCGGTTGACGATCTCATTGAGAATGCTGATGGTTTTGCTGGAGTCTTTCCTGAGCACAAGTATGAGATTGTGAAGAGGTTACAAGCTAGAAAACACATTTGTGGGATGACTGGTGATGGGGTGAATGATGCACCTGCCCTGAAGATTGCAGACATAGGTATTGCTGTTGCAGACGCTACAGATGCTGCCAGAAGTGCTTCTGACATAGTGCTAACAGAACCTGGGTTGAGTGTGATCATAAGTGCAGTCTTAACTAGCCGTGCAATTTTCCAGAGAATGAAAAACTACACCATATATGCTATATCTATCACTATTCGTATTGTGCTTGGTTTCATGTTGCTGAACAGCTTTTGGAGCTTTGACTTTCCTCCCTTTATGGTCCTTGTCATTGCCATTCTCAATGATGGTACCATCATGACAATATCTAAAGATAGGGTTAAACCTTCTCCATTTCCTGATAGTTGGAAGCTGAGTGAAATTTTTGCAACTGGAATTGTTCTTGGCAGCTATCTGGCTCTAATGACTGTGATCTTCTTCTATATAGTCTTCGAAACAAACTTCTTTCCTGACCATTTTGGTGTGAGGCACTTCCGCGCAAGTCCTCATGATCCAGTCACTGATGACATGAATAAAAGGTTGGGATCTGCTGTCTATCTTCAAGTCAGTACAATTAGTCAAGCCTTAATTTTTGTGACACGGTCGAGGGGTTGGTCCTACACAGAAAGACCTGGTCTTTTGCTTGTTACAGCCTTCATTATTGCTCAGGCGGTTGCAACTGTTGTATCTGCCACTCTTTCTTGGGATGTTGCTGGGATTAAAAGTATAGGTTGGGGATGGACAGGAGTCATTTGGTTATACAATTCTATAACTTATGTATTTCTGGATCCTATAAAGTTTGGTGTTCGTTATGCATTAAGTGGAAGGGCGTGGAATCTGATGGTAAACCAAAGAACTGCATTCACAAACAAAAATGACTTTGGTAAAGAAGCTCGTGAGGCTGCATGGGCTGCTGAGCAGAGAACCTTACATGGCCTTCACTCTGCTGAGTCCAAAGGGTTTACAGAGAAGCACACCTTCAGAGAAATAAATACATTGGCAGAAGAGGCTAGGAGGCGAGCAGAGATAGCAAGGCTGAGAGAGCTTCACACTCTGAAAGGCAGGGTGGAATCATTTGCCAAGCTAAGGGGTTTGGACATTGATACCATGAATGGGCACTATACTGTCTAA 2880 0.4274 MVEGSMELEAIIKEAVDLENIPLEEVFDNLKCTREGLSSEQVQERHALFGYNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIAMAHGGNERSDYQDFIGIVLLLIINSTISFIEENNAGNAAAALMARLAPKTKVLRDGKWSEEDASVLVPGDIVSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKHPGEGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTTHVGHFQKVLTSIGNFCICSIAVGMIIEIIVIYGIHGRKYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFANGVDKDMVVLMAARASRLENQDAIDCAIVSMLADPKEARAGIKEVHFLPFNPTDKRTALTYLDHAGKMHRVSKGAPEQILNLSRNKSEIHQRVHAIIDKFAERGLRSLAVARQEVPEGTKNSPGGPWEFVGLLPLFDPPRHDSAETIKRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLSENNELGAVSVDDLIENADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAISITIRIVLGFMLLNSFWSFDFPPFMVLVIAILNDGTIMTISKDRVKPSPFPDSWKLSEIFATGIVLGSYLALMTVIFFYIVFETNFFPDHFGVRHFRASPHDPVTDDMNKRLGSAVYLQVSTISQALIFVTRSRGWSYTERPGLLLVTAFIIAQAVATVVSATLSWDVAGIKSIGWGWTGVIWLYNSITYVFLDPIKFGVRYALSGRAWNLMVNQRTAFTNKNDFGKEAREAAWAAEQRTLHGLHSAESKGFTEKHTFREINTLAEEARRRAEIARLRELHTLKGRVESFAKLRGLDIDTMNGHYTV* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0502 959 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Apr10g0502 959 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Apr10g0502 959 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Apr10g0502 959 PRINTS P-type cation-transporting ATPase superfamily signature 507 517 - -
Apr10g0502 959 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Apr10g0502 959 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Apr10g0502 959 Gene3D - 134 218 - -
Apr10g0502 959 Gene3D - 96 824 - -
Apr10g0502 959 SUPERFAMILY HAD-like 327 635 IPR036412 -
Apr10g0502 959 Gene3D - 343 490 IPR023299 GO:0000166
Apr10g0502 959 Pfam haloacid dehalogenase-like hydrolase 327 602 - -
Apr10g0502 959 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Apr10g0502 959 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 563 665 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr10g0502 959 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 350 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr10g0502 959 SFLD p-type atpase 313 639 IPR044492 -
Apr10g0502 959 PANTHER CALCIUM-TRANSPORTING ATPASE 5 939 - -
Apr10g0502 959 Gene3D - 908 959 - -
Apr10g0502 959 SFLD C1.7: P-type atpase like 313 639 - -
Apr10g0502 959 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 36 814 IPR006534 GO:0008553|GO:0016021|GO:0120029
Apr10g0502 959 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Apr10g0502 959 PANTHER PLASMA MEMBRANE ATPASE 5 939 - -
Apr10g0502 959 CDD P-type_ATPase_H 36 850 IPR006534 GO:0008553|GO:0016021|GO:0120029
Apr10g0502 959 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr10g0502 959 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr10g0502 959 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr10g0502 959 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr10g0502 959 PRINTS H+-transporting ATPase (proton pump) signature 769 790 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr10g0502 959 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 856 IPR023298 -
Apr10g0502 959 Pfam E1-E2 ATPase 132 310 - -
Apr10g0502 959 Gene3D - 328 625 IPR023214 -
Apr10g0502 959 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Apr10g0502 959 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0502 Apr-Chr10 12084153 12091219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0502 8 959 Primary Pumps ATPases AT5G62670 79.140 0.0 1527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0502 K01535 - gmx:100794938 1675.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0502 10 12084153 12091219 Apr10g0502 10 12084153 12091219 ECH