Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0500 ATGAATCTCAACACCACTCTTGATTCCGATTTAGCTCTTCTAGAATCTATTCGACAACATCTCCTTAACGATACCGATGATTTCACTGCTCTAACGGAGGTTTTCGCCACAGCTAACGGCGCTGAATCAACGTCCACACTTCATGATAACGTCGTCGACTCTCCGTTAGAACGGACGACACCGGTTAATTGTGGGGCTGCGGCGGCGCGTGAGAGCCACGCGCCTCAGTGTTGTCAAAGCTACAAGGGAGTGAGGCGGAGGCCGTGGGGAAAGTTCGCGGCGGAAATTAGGGATCCGAAGAAGAACGGCGCGAGGGTTTGGCTCGGGACATTTGAGTCGGCTGAGGATGCGGCTTTGGCTTATGATCAAGCTGCTTTCAGAATGCGCGGCTCCAAAGCTAAGCTGAATTTTCCCCATTTGATTGGCTGCGATGTTGCTGAGCCGCAGAAATTGGTGGCTAAGCGGGGTTTGAGTGAGCCGAGTTCAGTGCGGCTGGGCTTGGAGCCGAAGACGAAGATGAGCCGAGCCAGCATCATTGACACGTCAGAGAAGTGGGATATGGAGGAGTGA 570 0.5333 MNLNTTLDSDLALLESIRQHLLNDTDDFTALTEVFATANGAESTSTLHDNVVDSPLERTTPVNCGAAAARESHAPQCCQSYKGVRRRPWGKFAAEIRDPKKNGARVWLGTFESAEDAALAYDQAAFRMRGSKAKLNFPHLIGCDVAEPQKLVAKRGLSEPSSVRLGLEPKTKMSRASIIDTSEKWDMEE* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0500 189 Gene3D AP2/ERF domain 80 139 IPR036955 GO:0003700|GO:0006355
Apr10g0500 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 7 163 - -
Apr10g0500 189 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
Apr10g0500 189 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
Apr10g0500 189 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Apr10g0500 189 PRINTS Ethylene responsive element binding protein signature 120 140 IPR001471 GO:0003700|GO:0006355
Apr10g0500 189 PANTHER DNA-BINDING DOMAIN 7 163 IPR044808 GO:0003700|GO:0009873
Apr10g0500 189 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677
Apr10g0500 189 CDD AP2 81 140 IPR001471 GO:0003700|GO:0006355
Apr10g0500 189 Pfam AP2 domain 81 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0500 Apr-Chr10 12062244 12062862 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0500 52 161 AP2-EREBP Transcription Factor Family AT2G44840 64.865 4.22e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr10g0500 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0500 K09286 - gmx:100806359 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0500 10 12062244 12062862 Apr10g0500 10 12062244 12062862 ECH