Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0499 ATGTCTTTCGATATTTCTTCGTTGGAATCTGTTCAACACTATCTTCTCGACCTTGAACACGATTCCAACACTCTCACCAATGTTTCATGCCACAAAATATGTTACACTTCAACGAACCAGCCTTTTCCAAGCCCCACTTTAGGCTTCGACAATATCAATGAAGCAAAGGAAACGGTGGCATGCAAAAGAGAACAACCTGCGAGGGCGCGTGAAGTTCACGCGCCACCGGAATGGAAGCGCTACCGAGGCGTGCGGCGTAGACCATGGGGAAAGTTTGCGGCAGAGATAAGAGACCCAAAGAAGAACGGTGCAAGGGTTTGGCTTGGGACTTATGATACTGAAGAAGAAGCTGGGTTGGCTTATGATAGAGCTGCTTTCAAGATGCGAGGAAACAAAGCTAAGTTAAATTTTCCTCACCTTATTGGATCTGATGTGCCTTCCAAGTCCATGAAAACGCTTAAGATTTCGAAGCAACAAACTTTGAAATCTTATTTATCATTTTCATCGAATTCAGAAACACAAAAGTTACCGATGAGGAAGAAGAATTTGGCCAATCTGTTGAACAAGTTGGCCAAAAATACAAAACAAATTAAGGTGTTTAGAATGAGTTTACAAGCAAACGGTGTTGATGTTGATTAA 639 0.4225 MSFDISSLESVQHYLLDLEHDSNTLTNVSCHKICYTSTNQPFPSPTLGFDNINEAKETVACKREQPARAREVHAPPEWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTEEEAGLAYDRAAFKMRGNKAKLNFPHLIGSDVPSKSMKTLKISKQQTLKSYLSFSSNSETQKLPMRKKNLANLLNKLAKNTKQIKVFRMSLQANGVDVD* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0499 212 PANTHER DNA-BINDING DOMAIN 4 195 IPR044808 GO:0003700|GO:0009873
Apr10g0499 212 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Apr10g0499 212 CDD AP2 79 140 IPR001471 GO:0003700|GO:0006355
Apr10g0499 212 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
Apr10g0499 212 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 4 195 - -
Apr10g0499 212 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677
Apr10g0499 212 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Apr10g0499 212 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
Apr10g0499 212 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Apr10g0499 212 PRINTS Ethylene responsive element binding protein signature 120 140 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0499 Apr-Chr10 12059667 12060311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0499 68 143 AP2-EREBP Transcription Factor Family AT2G44840 76.623 2.33e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr10g0499 AP2 7.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0499 K09286 - gmx:100527194 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0499 10 12059667 12060311 Apr10g0499 10 12059667 12060311 ECH
Apr10g0499 10 12059667 12060311 Apr4g2398 4 32970110 32970760 PCT