Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0498 ATGACTACTCATTTTTCTTCATTGGAATATGCTCAAGTTCAATCGTACCAGGTTGTGCATGAACATGATTCCCACGGCCCCGTGAATGTTTCCGATGACCACAACACCTTTTATTCTTCATCGTACAATCCGATTCCAAGCCCTACTCGTAATGATGACGCGACAACATGCAAAAGGAAAGCGCGTGAGATGAACGCGCCACCAAACTGGACGCACTACAGGGGCGTGAGGCGGAGGCCTTGGGGGAAGTTCGCAGCTGAGATATGGGATCCAAAGAAGAAGCGTGGAAGGGTGTGGCTTGGGACATATGACACTGAAGAGGATGCAGGTTTGGCTTATGATAGAGCTGCTTTTAAAATGAGAGGTAGTAAGGCCAAGTTAAATTTTCCACACCTCATTGGATCCCACGCGCCGCCAGAGACGGCGAGAGTGGCTGCGGCTTCGGAGACAAACTCGCCGGAGCCTTGTCTGCCTGTGTCGGAGGATAGTTCACGGCCACAGGGTTCAAATAAGAGAAGGAACCTAGCTGATTTGCTTAATAGGTTAGCCAAGAATAGAACCAAAGTGTGTGTTTGA 576 0.4931 MTTHFSSLEYAQVQSYQVVHEHDSHGPVNVSDDHNTFYSSSYNPIPSPTRNDDATTCKRKAREMNAPPNWTHYRGVRRRPWGKFAAEIWDPKKKRGRVWLGTYDTEEDAGLAYDRAAFKMRGSKAKLNFPHLIGSHAPPETARVAAASETNSPEPCLPVSEDSSRPQGSNKRRNLADLLNRLAKNRTKVCV* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0498 191 SUPERFAMILY DNA-binding domain 72 131 IPR016177 GO:0003677
Apr10g0498 191 PANTHER DNA-BINDING DOMAIN 10 188 IPR044808 GO:0003700|GO:0009873
Apr10g0498 191 MobiDBLite consensus disorder prediction 145 174 - -
Apr10g0498 191 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Apr10g0498 191 CDD AP2 71 132 IPR001471 GO:0003700|GO:0006355
Apr10g0498 191 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
Apr10g0498 191 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 10 188 - -
Apr10g0498 191 Pfam AP2 domain 71 122 IPR001471 GO:0003700|GO:0006355
Apr10g0498 191 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Apr10g0498 191 PRINTS Ethylene responsive element binding protein signature 112 132 IPR001471 GO:0003700|GO:0006355
Apr10g0498 191 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Apr10g0498 191 MobiDBLite consensus disorder prediction 140 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0498 Apr-Chr10 12022401 12022976 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0498 72 135 AP2-EREBP Transcription Factor Family AT2G44840 82.812 1.05e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr10g0498 AP2 6.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0498 K09286 - gmx:100792115 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0498 10 12022401 12022976 Apr10g0498 10 12022401 12022976 ECH