Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0480 ATGGAAGGGGAGAGAGATGTTAATCCCAATTATGAGCTCCAAGTTTCATTCACAAACCCCCCTCAAGCCATCCATGAAATGGGTTTTGTTCAATTTGAAGAAAACCAAGTTCTTAGCTTCTTGGCACCCTCTGCACAATCCCAATCTTCTCATCACTGTCAACCTCTAAACATTGGCAACAACAATACTGTTGCTACCACGATTGCTGCTGCCACCACTACCTCGGCTGCAACTATTGGTTTCAGCCATAACGACCTTGTCACCAGAACTTCTTGGAATAATGAACAGGTGCGAACTCTGGATCCCAAAACTGTCAATGATGAAAATTGCACTGGAAATACTAGTGATGGTAACAACACATGGTGGAGGAGTGCAGCATCTGAGAAGAGCAAGGCGAAAGTAAGGAGGAAGCTGAGAGAACCACGGTTTTGTTTCCAAACAAGAAGTGACGTGGATGTGCTTGATGATGGGTATAAATGGAGGAAGTACGGTCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTACTACCGCTGTACCCATAACAACTGTAGGGTGAAGAAAAGAGTTGAACGACTCTCCGAAGATTGTCGTATGGTGATAACTACCTATGAAGGCAGACACAACCATTCCCCTTGTGATGACCCAAATTCATCTGAACATGAATGTTTTACTTCTTTTTGA 687 0.4338 MEGERDVNPNYELQVSFTNPPQAIHEMGFVQFEENQVLSFLAPSAQSQSSHHCQPLNIGNNNTVATTIAAATTTSAATIGFSHNDLVTRTSWNNEQVRTLDPKTVNDENCTGNTSDGNNTWWRSAASEKSKAKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDPNSSEHECFTSF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0480 228 Gene3D WRKY domain 140 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr10g0480 228 Pfam WRKY DNA -binding domain 155 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g0480 228 ProSiteProfiles WRKY domain profile. 149 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g0480 228 SMART WRKY_cls 154 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g0480 228 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 14 226 - -
Apr10g0480 228 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 226 IPR044810 GO:0003700
Apr10g0480 228 SUPERFAMILY WRKY DNA-binding domain 146 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0480 Apr-Chr10 11627571 11635225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0480 3 228 WRKY Transcription Factor Family AT2G44745 55.128 3.78e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr10g0480 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0480 - - var:108347245 399.053