Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0462 ATGCCTCCGAAAACGGTGAAGAGAGGCGCTGCGGCGAAGAGGGGTGGCAGAGGAAGCAGGGGAACCACGAAGGGTGCACAGAACCAGCAGCACCATGAAGCTTCGGAAGAATCTGCGAAGATTGAAGAGAAACCGGTTGTTGAAGAGGAGCATAAGGTAGAAGAGAACCCTGTTGTTGAGGATAAACAACCCGTTGTTGAAGAGAAACCTGTGGTTGAGGACAAGTCTATTGATATGAATCAAATGGCTCCAGAGGCTGTTGAAGAAGCATCTCGTGCTCCTAATGGGTTACCTGTGGTCAAAAACGATGAAGAGGAGGTTAAGGAGCCCATAGATGATTATGAAAGAGATGAACGCTTAGATTTGGAGGATAATGAGCCCGAGTATGAACCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATGGATCAGGATGAGGTTCATGAGGTGGGAGATGAAGTAGAGGAAGAAGCTGAAGATAATGTTGGTGAAGAAGAGGGTGATATGGGTGAGGAAGAAGTTGAGGATGTTCATGATGAAATTGAGGGTGAAGAGGAGCATGAGCGTGCTGGTGAGGAGCATGAGCATCAAGACTTTGCTGATGTGGAGGAAGAGGAACACCGTGAAGTTGTGAAGGAGAGGAAAAAGCGGAAAGAATTTGAAGTTTTTGTTGGGGGCCTGGACAAGGATGCTACTGAAAGTGATCTGAGGACGGTTTTCAGTGAAGTTGGGGTGGTTACTGAGGTTAGGTTGATGATGAACCCTCAGACTAAAAAAAACAAGGGATTTGCATTCTTGCGTTTTGAGACTGTGGAACAAGCAAAACGAGCTGTAGCAGAGCTCAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGTGATACCCTATATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAACATTATGGAGTTACGAATGTTGAGGATTTGACTCTGGTAGAAGATACTAATGATGAAGGGAAGAACCGAGGATTTGCATTTTTGGAATTTGCCTCTCGTTCAGATGCTATGGATGCCTTTAAGCGACTGCAGAAGAGGGATGTTGTATTTGGAGTTGATAAGCCTGCAAAAGTTTCTTTTGCAGATTCCTTTATTGATCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTCATTGATGCATTGCCTCCCTCATGGGATGAAGATTATGTCCGGGATATTCTTAAGAAATATGGAGAGATTGAAAAGATTGAACTTGCTAGGAACATGCCAGCTGCTCGCAGGAAGGATTATGGTTTTGTTACATTTGGCACACATGATGCTGCTGTAAGATGTGCTGAAAACATTACAGGCACGGAGTTGGGTGAAGGTGACAAGAAGGCAAAAGTTAGAGCTAGGTTGTCAAGACCACTTCAGAGAGGCCGTGGAAAACATGTCAGTCGTGGGGACTATCGTTCTGGTCGTGGATCTGGAATAATGACAAGGCCTTCATGGAGCCGACCTGCACCTCGTAGTTTTCCTCCTCGTGGGGTAAGAGGAATTGGAAGTCGCCCTCCACCAGTCAGGCCTGTTAGTGTGAGAGATAGGCGCCCTATCATGTCTGTGCCAGTAAGAAGTAGGCCAGTGCCTCCTCCATCTAGATCTTATGATAGGAGACCAGTTGTTTCTGCATATCCAAAAAGTAGCATGAAGAGAGACTATGGTAGACGTGAGGATCTACCACCTCCAAGAAGTAGAGTTGCAGCAGATTATGGCTCAAGGATGGCTTCTGAAAGACGACCATCTTACAGGGATTATCCTGCCCGTGGTCCTGGCTACGCTGAGCCCCCTAGAAGCACATCTCGTGCTGCTCCAAGGCGAGGTTATGTGGATGATGGATACAGCCAAAGATTTGAGAGGCCTCCTCCTCCACCTCCTCCTCCACATCTAAGTTACCGTGAAGGACGCCCCCGAGATTATGATGCTCTGTCTGGCTCAAAACGTTCTTATGCTGCTATAGATGATGTTCCTCCGCGATATGAGGATACTGGTGCTCGCCAGTCAAGAGCTCGATTAGACTATGACTATGGTGGTAGTGCTTCACAATATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTCTGGGATATGGTGGTGGCAGCAGAAGCTCTATTTCTAGTCAAGATTCACATGGGATGTATGGCAGTCGACAGGGCATGAGTTATGGCGGAGGTGGATTTTATTGCATATATTCTGATTTATTATTATCAGCATCAGAATATTTGGTACTTAATTTTTTTGGTTTGTGTTCTATGTTAGGTTCTTTTGGTGGTGGGGATGTTGGTGGCATGTACTCATCAAGTTATGGTGGTGATTACATTTCTCGTGGAAGTGATGTTGGTGGCAGCTCGTATTCATCAATGTATTCTGGCAGGGGTGTTGGCGGTAGCAGTAGTTACATGGGTGGTGGTGGATCAGGATCTTATTATTGA 2508 0.4557 MPPKTVKRGAAAKRGGRGSRGTTKGAQNQQHHEASEESAKIEEKPVVEEEHKVEENPVVEDKQPVVEEKPVVEDKSIDMNQMAPEAVEEASRAPNGLPVVKNDEEEVKEPIDDYERDERLDLEDNEPEYEPEEYGGVDYDEKEMDQDEVHEVGDEVEEEAEDNVGEEEGDMGEEEVEDVHDEIEGEEEHERAGEEHEHQDFADVEEEEHREVVKERKKRKEFEVFVGGLDKDATESDLRTVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFASRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDILKKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVRCAENITGTELGEGDKKAKVRARLSRPLQRGRGKHVSRGDYRSGRGSGIMTRPSWSRPAPRSFPPRGVRGIGSRPPPVRPVSVRDRRPIMSVPVRSRPVPPPSRSYDRRPVVSAYPKSSMKRDYGRREDLPPPRSRVAADYGSRMASERRPSYRDYPARGPGYAEPPRSTSRAAPRRGYVDDGYSQRFERPPPPPPPPHLSYREGRPRDYDALSGSKRSYAAIDDVPPRYEDTGARQSRARLDYDYGGSASQYGDAYGDRLGRSSLGYGGGSRSSISSQDSHGMYGSRQGMSYGGGGFYCIYSDLLLSASEYLVLNFFGLCSMLGSFGGGDVGGMYSSSYGGDYISRGSDVGGSSYSSMYSGRGVGGSSSYMGGGGSGSYY* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0462 835 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 370 IPR000504 GO:0003723
Apr10g0462 835 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 401 466 IPR000504 GO:0003723
Apr10g0462 835 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 292 IPR000504 GO:0003723
Apr10g0462 835 Gene3D - 302 385 IPR012677 -
Apr10g0462 835 SUPERFAMILY RNA-binding domain, RBD 218 300 IPR035979 GO:0003676
Apr10g0462 835 MobiDBLite consensus disorder prediction 116 184 - -
Apr10g0462 835 MobiDBLite consensus disorder prediction 30 75 - -
Apr10g0462 835 SUPERFAMILY RNA-binding domain, RBD 301 466 IPR035979 GO:0003676
Apr10g0462 835 MobiDBLite consensus disorder prediction 185 210 - -
Apr10g0462 835 MobiDBLite consensus disorder prediction 1 210 - -
Apr10g0462 835 MobiDBLite consensus disorder prediction 99 115 - -
Apr10g0462 835 CDD RRM_SF 304 371 - -
Apr10g0462 835 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 399 481 IPR000504 GO:0003723
Apr10g0462 835 MobiDBLite consensus disorder prediction 574 588 - -
Apr10g0462 835 CDD RRM_SF 224 295 - -
Apr10g0462 835 SMART rrm1_1 303 382 IPR000504 GO:0003723
Apr10g0462 835 SMART rrm1_1 223 296 IPR000504 GO:0003723
Apr10g0462 835 SMART rrm1_1 400 475 IPR000504 GO:0003723
Apr10g0462 835 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 300 IPR000504 GO:0003723
Apr10g0462 835 Gene3D - 158 297 IPR012677 -
Apr10g0462 835 Gene3D - 389 506 IPR012677 -
Apr10g0462 835 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 386 IPR000504 GO:0003723
Apr10g0462 835 PANTHER RNA RECOGNITION MOTIF 779 835 - -
Apr10g0462 835 PANTHER RNA RECOGNITION MOTIF 1 753 - -
Apr10g0462 835 MobiDBLite consensus disorder prediction 479 672 - -
Apr10g0462 835 CDD RRM_SF 401 475 - -
Apr10g0462 835 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 779 835 - -
Apr10g0462 835 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0462 Apr-Chr10 11381046 11387535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0462 224 480 Eukaryotic Initiation Factors Gene Family AT1G49760 24.315 3.75e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0462 - - aprc:113850151 1180.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0462 10 11381046 11387535 Apr10g0462 10 11381046 11387535 ECH