Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0440 ATGGATGAATCACGAGAAGAATGGCTTTCTGATTTGGAAATGGATGACTGCAATTTAATCGGTGACATGAACTCTCTTGTGGAAGTTTTCGAGGGAGAGAATTCAGTGCAGCAAGAACTATGGTGGAAAGGACACTACTCTGATGCAAATCTCATTAAAGAAAGCACCACCCTTAGAAGCGACATCCTCAAATCTTTAATGCCTAACCCTCTTGCTTTTGAGGATTACACTGCAGTGCCACATATTCCCAAGAAAACATGCCAATATCATGGTGAATATTCAAAGGAGACCCTTGAAGAACCAGAAAATAATAGAAAATCTAAGAGGGGTAGAAGCTCTTCTATTGTACAAGATCACATCACAACTGAGAGAAAGAGAAGAGAGAATATTACCAGAATGTTCATAGCACTTTCAGCCATTATTCCAGGGTTGAAAAAGATGGACAGGGTTTCTATCCTTAAATATGCTTTCGACTATGTGAAATATCTCCAGAAGCGTGTAAAGGATTTAGAGGAACAAAACAAAAAGAGAAAGATAGAATCTGCGGTATGCTTCAAAATGAACAAGTCCAATGTTAGTACTGTTGCTGACGACTTTTCATGCAAACCTGATGGCTTAGATACTCCTATCAAAATATGTTGTCCTAAAGTTGAAGCAAGAGTCTTAGCAAAAGTTGTACTCATCAGAGTTATGTGTGAAAAACAAAAGAACATTGTTCCTAAACTACTGGCCAAGCTTGAAGCTCTTAATCTCTCCATTGTTTGTATCAATGTTTTGCCGTTTGGGAATTCCATGCTAAACATTACCAGCATTGCTCAGATGGGTCACGGTCAATTCAGCATGAGAATGGACGTCTTAATGAAAGTTTTGACTGAGGATTTGTTTGAGTGTTGTAACATGCAACAATAA 909 0.3828 MDESREEWLSDLEMDDCNLIGDMNSLVEVFEGENSVQQELWWKGHYSDANLIKESTTLRSDILKSLMPNPLAFEDYTAVPHIPKKTCQYHGEYSKETLEEPENNRKSKRGRSSSIVQDHITTERKRRENITRMFIALSAIIPGLKKMDRVSILKYAFDYVKYLQKRVKDLEEQNKKRKIESAVCFKMNKSNVSTVADDFSCKPDGLDTPIKICCPKVEARVLAKVVLIRVMCEKQKNIVPKLLAKLEALNLSIVCINVLPFGNSMLNITSIAQMGHGQFSMRMDVLMKVLTEDLFECCNMQQ* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0440 302 PANTHER BHLH TRANSCRIPTION FACTOR 70 301 - -
Apr10g0440 302 Gene3D - 116 184 IPR036638 GO:0046983
Apr10g0440 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983
Apr10g0440 302 MobiDBLite consensus disorder prediction 94 122 - -
Apr10g0440 302 Coils Coil 160 180 - -
Apr10g0440 302 SMART finulus 120 169 IPR011598 GO:0046983
Apr10g0440 302 Pfam Helix-loop-helix DNA-binding domain 119 164 IPR011598 GO:0046983
Apr10g0440 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 180 IPR036638 GO:0046983
Apr10g0440 302 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 70 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0440 Apr-Chr10 11020822 11022560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0440 71 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.528 1.47e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr10g0440 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0440 - - gmx:100799087 354.369