Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0426 ATGAAGGAGAGGCAACGTTGGAAAGCTGAAGAGGACGCGTTACTATGTGCTTATGTGAGACAGTATGGTCCTAGGGAATGGAATCTCGTGTCTCAGCGCATGAACACACCTCTCAACAGGGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCAGGCATCAAGAAAGGGTCTCTCACCGAAGAAGAGCAGCGTCTTGTTATCCGGCTTCAAGCGAAACACGGCAACAAGTGGAAGAAAATCGCTGCAGAAGTTCCGGGTAGAACAGCCAAGAGGTTAGGCAAGTGGTGGGAAGTATTCAAAGAGAAGCAGCAGAGGGAAAAGCAAGAGATCAACAAAACAATTAGCCCAATTGATGACACCAAATATGATCATATACTAGAGACTTTCGCAGAGAAACTAGTGAAAGAACACCTTTCACAATCATCATACCTTATGGCTGCTTCTAATGGACCATTTCTTCACACAGACGCACCTGCACCATCAGCATTGCTTCCTCCTTGGCTTTCAAACACAAATAACAATCCCTCAGCCATTAGGCCACCTTCCCCTTCCGTGACACTAAGTCTCTCCCCCTCAACAGCGCCTCCTCGGTGGTTGCAGCCCGAAAGAGGGCCAGGGAATGTAACAGCACCTCATGGTGGATCTGTTCCAGCCTTCAGCGATAACATGGTCATGTCAGAATTGATAGAGTGCTGCAAGGAGTTGGAAGAGGGGCAGCGCGCATGGACAGCACATAGGAAGGAGGCAGCATGGCGGTTAAGAAGGGTGGAGTTGCAGTTGGAGGCAGAGAAAACGAGTCGAAGGAGGGAGAAGGTGGAGGAAATTGAAGCAAAGATTAAAGCTCTCTGGGAAGAACAGAATGCTGCTTTGGATAGAATTGAAGCAGAATATAAAGAACAGTTATCTGGATTGAGAAAAGATGCTGAAAAGAAGGAGCAGAAGTTAGCTGAGCAATGGAATGCAAAGCACATGCGGCTTGTGAAGGTTATGGAGCAAGTAGGATGCAGACTACCCCGGATTGTTGAGCCTAATGGAAGGTAA 1053 0.4758 MKERQRWKAEEDALLCAYVRQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEINKTISPIDDTKYDHILETFAEKLVKEHLSQSSYLMAASNGPFLHTDAPAPSALLPPWLSNTNNNPSAIRPPSPSVTLSLSPSTAPPRWLQPERGPGNVTAPHGGSVPAFSDNMVMSELIECCKELEEGQRAWTAHRKEAAWRLRRVELQLEAEKTSRRREKVEEIEAKIKALWEEQNAALDRIEAEYKEQLSGLRKDAEKKEQKLAEQWNAKHMRLVKVMEQVGCRLPRIVEPNGR* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0426 350 SMART sant 58 106 IPR001005 -
Apr10g0426 350 SMART sant 3 55 IPR001005 -
Apr10g0426 350 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 350 - -
Apr10g0426 350 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Apr10g0426 350 PANTHER TRANSCRIPTION FACTOR AS1 1 350 IPR031055 GO:0005634|GO:0006351|GO:0010338
Apr10g0426 350 Gene3D - 4 58 - -
Apr10g0426 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Apr10g0426 350 Pfam Myb-like DNA-binding domain 7 67 - -
Apr10g0426 350 Coils Coil 259 279 - -
Apr10g0426 350 CDD SANT 6 53 IPR001005 -
Apr10g0426 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Apr10g0426 350 CDD SANT 63 104 IPR001005 -
Apr10g0426 350 MobiDBLite consensus disorder prediction 178 199 - -
Apr10g0426 350 Gene3D - 62 121 - -
Apr10g0426 350 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Apr10g0426 350 Coils Coil 298 322 - -
Apr10g0426 350 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Apr10g0426 350 MobiDBLite consensus disorder prediction 178 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0426 Apr-Chr10 10418128 10421193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0426 1 343 MYB Transcription Factor Family AT2G37630 65.668 9.27e-160 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr10g0426 Myb_DNA-bind_6 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0426 K09422 - qsu:111993035 512.301