LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g0393	ATGGTGTCAGGTTCAGGGATCTGCGCGAAGAGGGTGGTAGTGGACGCACGGCACCACATGCTGGGTCGTTTGGCTTCGATCGTTGCGAAGGAGCTTCTAAACGGCCAGAAGGTTGTTGTCGTTCGCTGCGAGGAGATTTGTATCTCTGGTGGCCTCGTTAGACAGAAGATGAAGTATATGAGGTTCCTCCGCAAACGCATGAACACCAAACCCTCTCACGGTCCCATCCATTTCCGTGCACCCGCCAAGATTTTCTGGCGCACAGTTCGTGGAATGATACCGCACAAGACAAAGCGTGGGGAAGCTGCACTTGCTCGTTTGAAGGTTTATGAGGGAATCCCTCCTCCATATGACAAGATGAAGAGGATGGTTGTACCTGATGCTCTGAAGGTGTTGAGGCTTCAGAAAGGGCATAAATTCTGCCTACTGGGTAGGTTGTCATCTGAAGTTGGGTGGAACTACTATGATACCATCAGGGAGCTGGAAAAGAAGAGAAAGGAAAAAGCACATTTGGTTTACGAGAGAAAGAAGCAGCTCAACAAACTAAGGGTGAAAGCTGAGAAGGTTGCTGATGAGAAGCTTGGTACCCAACTTGATATCCTTGCTCAAGTTAAATACTAA	621	0.4863	MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGEAALARLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKFCLLGRLSSEVGWNYYDTIRELEKKRKEKAHLVYERKKQLNKLRVKAEKVADEKLGTQLDILAQVKY*	207

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g0393	206	ProSitePatterns	Ribosomal protein L13 signature.	89	112	IPR023563	GO:0003735\|GO:0005840\|GO:0006412
	Apr10g0393	206	PANTHER	RIBOSOMAL PROTEIN L13	1	206	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Apr10g0393	206	Gene3D	-	156	206	-	-
	Apr10g0393	206	TIGRFAM	L13_A_E: ribosomal protein uL13	12	154	IPR005755	GO:0003735\|GO:0006412\|GO:0015934
	Apr10g0393	206	Pfam	Ribosomal protein L13	10	115	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Apr10g0393	206	Gene3D	Ribosomal protein L13	8	154	IPR036899	GO:0003735\|GO:0005840\|GO:0006412
	Apr10g0393	206	CDD	Ribosomal_L13	12	113	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Apr10g0393	206	SUPERFAMILY	Ribosomal protein L13	12	154	IPR036899	GO:0003735\|GO:0005840\|GO:0006412
	Apr10g0393	206	Hamap	50S ribosomal protein L13 [rplM].	11	135	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Apr10g0393	206	PANTHER	60S RIBOSOMAL PROTEIN L13A-4	1	206	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g0393	Apr-Chr10	9709619	9711756	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr10g0393	1	206	Cytoplasmic Ribosomal Protein Gene Family	AT5G48760	90.291	7.44e-141	390

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g0393	K02872		-	gmx:100813340	397.512

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr10g0393	10	9709619	9711756	Apr10g0393	10	9709619	9711756	ECH