Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0383 ATGGAAGGTCGCCGGAGGGTAACGCTCTATGATCAAATGACAGCTGGAAACAGTAGTAGCCGAGACTCGCTAGCCAGCTTGATGCTCGACGACGTCGTTTTCAAGAAGACCGAAGCCGAAGGGAGCCGCAGGCTGAGCCGAAGCGGAAGCCGAACCCTCCAAGACATCATCTACGAAGATGAACCCAACAACAACAACAACGTCAAGGATCATCGCAAGCCGTGGCAAGCCTTGAAGGACAAGCTTCGGTTCAAGCACACTAACGTTAATGATAATGTTAACACAACAACGTTGCCATCATCTCAAGCTCGCCTTGACTCGGCCGCATCAACTCAGCACAACTCGGCCGCACAACAACAAAACGACGTCATCGAGGAAGACGTTAACGATTCAGATCCGACAACCCAACTGGAGTCTCCGGTCGACAACCCTGTCGCCGGCAGCGACTCCTCCGACGAGGGAAACAACCACGCGCCGGCGGGGATGTCGCTGATGGATTTGTTAGAGGAAACGGAGCAGGAAATGGATTTGTATAGAATGAGTGATGATGATGACGTTGAAGAATATGGCAAAGAAGAAGAAGGGGGTGGCGCAGAAGAAAAGGGTGGTGTGGTGGAGTATAATTGCTGCGTGTGCATGGTGAGGCATAAAGGTGCGGCGTTTATACCGTGTGGACACACGTTTTGCAGGATGTGTTCTAGGGAGATTTGGGTGAACAGAGGGAATTGCCCTCTCTGCAATAATTTAATTTTGGAAATTCTTGATATATTTTGA 774 0.5026 MEGRRRVTLYDQMTAGNSSSRDSLASLMLDDVVFKKTEAEGSRRLSRSGSRTLQDIIYEDEPNNNNNVKDHRKPWQALKDKLRFKHTNVNDNVNTTTLPSSQARLDSAASTQHNSAAQQQNDVIEEDVNDSDPTTQLESPVDNPVAGSDSSDEGNNHAPAGMSLMDLLEETEQEMDLYRMSDDDDVEEYGKEEEGGGAEEKGGVVEYNCCVCMVRHKGAAFIPCGHTFCRMCSREIWVNRGNCPLCNNLILEILDIF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0383 257 SUPERFAMILY RING/U-box 208 253 - -
Apr10g0383 257 SMART ring_2 209 246 IPR001841 -
Apr10g0383 257 MobiDBLite consensus disorder prediction 133 157 - -
Apr10g0383 257 ProSiteProfiles Zinc finger RING-type profile. 209 247 IPR001841 -
Apr10g0383 257 PANTHER OS01G0917900 PROTEIN 96 257 - -
Apr10g0383 257 PANTHER OS01G0917900 PROTEIN 2 143 - -
Apr10g0383 257 MobiDBLite consensus disorder prediction 88 124 - -
Apr10g0383 257 PANTHER OS01G0917900 PROTEIN 96 257 - -
Apr10g0383 257 PANTHER OS01G0917900 PROTEIN 2 143 - -
Apr10g0383 257 Pfam Zinc finger, C3HC4 type (RING finger) 207 250 - -
Apr10g0383 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 257 IPR013083 -
Apr10g0383 257 CDD RING-HC 209 246 - -
Apr10g0383 257 MobiDBLite consensus disorder prediction 88 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0383 Apr-Chr10 9443524 9444629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0383 4 257 C3H Transcription Factor Family AT4G13100 35.206 2.73e-42 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0383 - - gmx:100819018 289.271