Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0375 ATGGCTGTTCCAAAAGTAAATGAAAAGTTGCTTGAAGACCTTGAAGAAATGGGATTTCCACAGGCACGGGCAATCAGAGCACTATATTATTCTGGCAATACCAGCTTAGAGGATGCTATAAATTGGATGATTGATCATTGGAATGACAATGATATTGATGAGATGCCACTGGTAGATGTAGACATTGATATTGAGACGTCCTCCGAAGCATTTCCTATCACAGATGAAATGAGAATCAAAGCACAGAAATTAAGAGAACAAGAGCGTAAGAGGAGACAGGAAGAAGAAAAAAGACAGGAGAGAGAAAGGGAGAAGGAGAGGATTCAAGCTGGTAAGAAACTCCTTGAGGCAAAGCGAATTGCCGAAGAAAATGAAAGAAATCGGAATTTAGCCTTGAGAAAAGCAGAGAAAGAAGAAGAGAAAAGAGCTAGAGAGAAAGTCCTCCAAAAACTTGAGCAAGATAAGTTAAATAGAAGGCATAAACAAGGATTGCCTTTGGAAGGCCTGGCTACTGTGAGATCATCTGCTATTGGAACACAAGAAAAGAAGCCAAAGCCTGCTTATACCACTGCGCAAGTTGAGCACTTGAGAGAATGTCTAAGGAATCTCAAGCGTAACCACCCGAGTGAACATGCCAGAGTCAGAAGGGCCTTTGAAACACTTCTAGTGTATGTTGGAAATGTTGCCAAAAATCCCCAGGAGGAGAAGTATCGAAAGATCCGATTGAGCAACCCATTATTTCAGGATAGAGTTGGAAGTTTAAATGGAGGTGTAGAGTTTCTTGAGCTCTGTGGTTTTGAGAGAATGGGTGACTTCTTGTGTCTTCCTCATGAAAAAGTTGACACGTCACTGCTAAATTCAGCTGGTTTTCTCTTACATTCTGCGATGGCAAATCCTTTCTTTGGCGTTTTAAGTATTCCTAATTAA 927 0.4088 MAVPKVNEKLLEDLEEMGFPQARAIRALYYSGNTSLEDAINWMIDHWNDNDIDEMPLVDVDIDIETSSEAFPITDEMRIKAQKLREQERKRRQEEEKRQEREREKERIQAGKKLLEAKRIAEENERNRNLALRKAEKEEEKRAREKVLQKLEQDKLNRRHKQGLPLEGLATVRSSAIGTQEKKPKPAYTTAQVEHLRECLRNLKRNHPSEHARVRRAFETLLVYVGNVAKNPQEEKYRKIRLSNPLFQDRVGSLNGGVEFLELCGFERMGDFLCLPHEKVDTSLLNSAGFLLHSAMANPFFGVLSIPN* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0375 308 CDD PUB_UBA_plant 200 304 - -
Apr10g0375 308 Pfam UBA/TS-N domain 7 42 IPR015940 -
Apr10g0375 308 SUPERFAMILY UBA-like 5 57 IPR009060 GO:0005515
Apr10g0375 308 CDD UBA_PUB_plant 6 53 - -
Apr10g0375 308 SMART uba_6 7 45 IPR015940 -
Apr10g0375 308 Gene3D - 185 293 - -
Apr10g0375 308 PANTHER F13M7.16 PROTEIN 1 305 - -
Apr10g0375 308 Coils Coil 77 118 - -
Apr10g0375 308 PANTHER PUB DOMAIN-CONTAINING PROTEIN-RELATED 1 305 - -
Apr10g0375 308 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Apr10g0375 308 Coils Coil 120 157 - -
Apr10g0375 308 Pfam PUB domain 213 281 IPR018997 -
Apr10g0375 308 SMART PGNneu 216 277 - -
Apr10g0375 308 MobiDBLite consensus disorder prediction 84 109 - -
Apr10g0375 308 Gene3D - 8 53 - -
Apr10g0375 308 SUPERFAMILY PUG domain-like 194 300 IPR036339 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0375 Apr-Chr10 9244185 9253697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0375 1 304 C2H2 Transcription Factor Family AT1G04850 58.576 1.17e-94 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0375 K24348 - gmx:100781260 438.728