Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0342 ATGGAAGCTAATGGAATTGATGATATTAAGATACCTTTGTTGCAGACCCAAGAAGACCTCACCGTTAAGGCTGTTACGTTCCAAATAAGTGACGTTAAGTGTGCTTCCAGTGTCAATTCCGTTGAGTCCGTCGTTAGGAACCTTAACGGCGTCAAAAGCGTCGCGGTGTCGCCACTCGATGGCCGAGCCGCAATCAAGTTTGTCCCCAAGTTCGTCACCGCAAAAGGAATAAAAGAAAGCATAGAGGAGAGTGGTTTTAGAGTGTATGAACTTCATGAGCAGGACATAGCAGTGTGCCGGGTGAGGATTAAAGGAATGGCATGCACAAGCTGCTCTGAGTCCGTAGAGAATGCCCTTCAAATGGTTGAAGGGGTGAAAAAGGCCACAGTTGGTCTTGCTTTAGAGGAGGCGAAAGTGCACTTTGATCCTAACCTCACTGATACTGACAAGATAATTGAGGCCATAGAAGATGCCGGGTTTGGGGCAGATCTTGTTAGCTCTGGGAATGATGCAAATAAAGTGCATCTAAAACTTGAAGGGGTTGATTCTGCAGAAGATGTGAATGTAGTAATGTCTTCTCTTCAGTTAGCTGTGGGGGTGAACCATGTTGAAATGGATTTATCAGAACATAAAGTTACAGTTAGCTATGATCCAGACATTACTGGTCCAAGATCTCTCATTCACTGTGTTCAGGAAGCTAGCTGTGGCCCCAAGAGGTATCAAGCGACCTTGTATTCTCCTTCAGGGCAACGAGAAAGGGATAAGGAAAATGAAATTCGTATGTATAGGGACCAATTTTTGTTCAGCTGCTTCTTTTCCGTTCCTGTGTTTGTATTTGCCATGGTGCTTCCCATGCTCCCTCCTTGTGGCAACTGGTTAAACTACAAGATCCACAATATGCTCACCCTTGGGTTGCTTTTAAGATGGATCCTTAGCACACCTGTGCAGTTCATAGTTGGAAAAAGGTTCTATGTGGGATCATATCATGCATTGAAGCGAAAATCTGCTAACATGGATGTGCTGGTTGCGCTAGGCACAAATGCTGCTTATTTTTACTCAATATATATTTTAATAAAAGCACTGACTTCAGATACATTTCAAGGACAAGATTTCTTTGAGACAAGTTCCATGTTGATATCCTTTATTCTATTAGGGAAATATTTGGAGATTGTAGCAAAAGGAAAAACGTCAGATGCTTTAGGAAAGCTGACTCAACTTGTTCCTGATAAAGCTTATTTGGTAGCAATTGATATTGATGGAAATGTCATCACAGAAACAGAAATTGACACCCAACTTTTGCAAAAGAATGACATAATTAAGATTGTTCCTGGGGCCAAAATTCCTGTTGATGGTATTGTTATAAAAGGGCAAAGCTATGCAAATGAAAGTATGATCACTGGTGAGGCAAGACCTGTTAATAAAATTCCAGGAGAAAAGGTTATCAGTGGAACTATCAATGAGAATGGCTGCTTACTGGTTAAGGCTACAAATGTTGGATCAGAAACTGCACTTTCTCAAATTGTTCAACTTGTAGAAGCTGCACAACTAGCCAAAGCACCAGTCCAAAAACTTGCTGACCAGATTTCAAGGGTATTTGTTCCAATAGTGGTTGTTGCAGCATTGGTAACATGGCTGGGATGGTTCATTCCTGGGGAAGCTGGTATTTACCCCAAACATTGGATACCGAAAGCAATGGATGCATTTGAGTTTGCTTTACAGTTTGCTATTTCTGTGCTAGTTGTTGCTTGCCCATGTGCTTTAGGTCTTGCAACACCAACTGCAGTCATGGTTGCCTCAGGCTTAGGTGCCTCTCAAGGTGTGCTCATCAAGGGTGGAGATGCACTGGAAAAGGCACACAAGGTAAAAACTGTTGTGTTTGATAAGACCGGGACACTAACAGTTGGGAAGCCAGTGGTTGTTAGTGCTGTGCTGTTTAATGAATTTTCTATGGAGGAGTTATGTGACATGGCAATTGCTGTGGAGGCAAGTAGTGAGCACCCCATAGCAAAAGCTGTTGTGGCACATGCAAAGAGGTTGCGCCAAAAATTTGGTTCTTGCACTGAGGAAGTCCTGGATGTGGATGATTTTGAGGTACACATGGGAGCTGGTGTAAGTGGAAAAGTTGGTGATAGACCAGTTTTAGTCGGAAACAAGAGACTCATGCATGCTTCTAATGTTCCAATACGTTCTGAGGTTGAGAAGTACATCTCTGAAAATGAAATTCTGGCTAGAACTTGTGTTTTGGTTTCAATTGATGGAAAGATTGCCGGAGCATTCTCTGTAACTGATCCTGTAAAACCAGAGGCTAAACGCGTCATATCTTTTCTCCACTCCATGGGCATCTCAAGCATCATAGTGACTGGTGATAACTGCGCTACTGCAACTGCTATTGCAAATGAAGTCGGTATTGATAAGGTCTTTGCTGAGACAGATCCCGTGGGCAAAGCTGACAAGGTGAAAGATTTGCAGATGAAAGGAATGACTGTGGCAATGGTGGGTGATGGAATAAATGATTCACCGGCCTTGGTTGCTGCTGATGTTGGCATGGCAATTGGTGCTGGTACTGACATAGCTATAGAAGCTGCTGATATAGTTCTGGTCAAAAGCAGCTTGGAAGATGTGATTACAGCCATAGATCTTTCAAGAAAGACCATGTCCAGGATTCGGCTGAACTACATCTGGGCGCTTGGTTACAACATTCTAGGCATGCCAATTGCTGCTGGAGTCTTGTACCCCTTTATTGGAATCAGATTGCCCCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCATCTCTTAGTGTGGTTTCTTCCTCTCTTTTGCTGCAGTTCTACAAAAAGCCTTTGCATATAGAATCAACTTGA 2862 0.4308 MEANGIDDIKIPLLQTQEDLTVKAVTFQISDVKCASSVNSVESVVRNLNGVKSVAVSPLDGRAAIKFVPKFVTAKGIKESIEESGFRVYELHEQDIAVCRVRIKGMACTSCSESVENALQMVEGVKKATVGLALEEAKVHFDPNLTDTDKIIEAIEDAGFGADLVSSGNDANKVHLKLEGVDSAEDVNVVMSSLQLAVGVNHVEMDLSEHKVTVSYDPDITGPRSLIHCVQEASCGPKRYQATLYSPSGQRERDKENEIRMYRDQFLFSCFFSVPVFVFAMVLPMLPPCGNWLNYKIHNMLTLGLLLRWILSTPVQFIVGKRFYVGSYHALKRKSANMDVLVALGTNAAYFYSIYILIKALTSDTFQGQDFFETSSMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAYLVAIDIDGNVITETEIDTQLLQKNDIIKIVPGAKIPVDGIVIKGQSYANESMITGEARPVNKIPGEKVISGTINENGCLLVKATNVGSETALSQIVQLVEAAQLAKAPVQKLADQISRVFVPIVVVAALVTWLGWFIPGEAGIYPKHWIPKAMDAFEFALQFAISVLVVACPCALGLATPTAVMVASGLGASQGVLIKGGDALEKAHKVKTVVFDKTGTLTVGKPVVVSAVLFNEFSMEELCDMAIAVEASSEHPIAKAVVAHAKRLRQKFGSCTEEVLDVDDFEVHMGAGVSGKVGDRPVLVGNKRLMHASNVPIRSEVEKYISENEILARTCVLVSIDGKIAGAFSVTDPVKPEAKRVISFLHSMGISSIIVTGDNCATATAIANEVGIDKVFAETDPVGKADKVKDLQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFIGIRLPPWLAGACMAASSLSVVSSSLLLQFYKKPLHIEST* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0342 953 Pfam Heavy-metal-associated domain 100 160 IPR006121 GO:0046872
Apr10g0342 953 Pfam Heavy-metal-associated domain 26 86 IPR006121 GO:0046872
Apr10g0342 953 SUPERFAMILY HMA, heavy metal-associated domain 93 168 IPR036163 GO:0046872
Apr10g0342 953 CDD HMA 46 89 IPR006121 GO:0046872
Apr10g0342 953 PRINTS P-type cation-transporting ATPase superfamily signature 461 475 - -
Apr10g0342 953 PRINTS P-type cation-transporting ATPase superfamily signature 625 639 - -
Apr10g0342 953 PRINTS P-type cation-transporting ATPase superfamily signature 757 768 - -
Apr10g0342 953 PRINTS P-type cation-transporting ATPase superfamily signature 779 789 - -
Apr10g0342 953 PRINTS P-type cation-transporting ATPase superfamily signature 832 851 - -
Apr10g0342 953 PRINTS P-type cation-transporting ATPase superfamily signature 855 867 - -
Apr10g0342 953 ProSiteProfiles Heavy-metal-associated domain profile. 98 164 IPR006121 GO:0046872
Apr10g0342 953 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 11 950 - -
Apr10g0342 953 SUPERFAMILY Calcium ATPase, transmembrane domain M 370 618 IPR023298 -
Apr10g0342 953 Gene3D - 616 882 IPR023214 -
Apr10g0342 953 SUPERFAMILY HAD-like 623 938 IPR036412 -
Apr10g0342 953 SUPERFAMILY HMA, heavy metal-associated domain 23 93 IPR036163 GO:0046872
Apr10g0342 953 Gene3D - 19 89 - -
Apr10g0342 953 ProSitePatterns Heavy-metal-associated domain. 103 132 IPR017969 GO:0046872
Apr10g0342 953 Gene3D - 393 515 - -
Apr10g0342 953 Pfam haloacid dehalogenase-like hydrolase 621 846 - -
Apr10g0342 953 Pfam E1-E2 ATPase 420 603 - -
Apr10g0342 953 Gene3D - 171 242 - -
Apr10g0342 953 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 378 909 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr10g0342 953 PANTHER ATP7, ISOFORM B 11 950 - -
Apr10g0342 953 ProSiteProfiles Heavy-metal-associated domain profile. 173 239 IPR006121 GO:0046872
Apr10g0342 953 SFLD Haloacid Dehalogenase 607 884 - -
Apr10g0342 953 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 338 941 IPR027256 GO:0006812|GO:0016021|GO:0019829
Apr10g0342 953 SUPERFAMILY Calcium ATPase, transduction domain A 425 511 IPR008250 -
Apr10g0342 953 SUPERFAMILY HMA, heavy metal-associated domain 167 237 IPR036163 GO:0046872
Apr10g0342 953 ProSitePatterns E1-E2 ATPases phosphorylation site. 627 633 IPR018303 -
Apr10g0342 953 CDD HMA 101 162 IPR006121 GO:0046872
Apr10g0342 953 CDD P-type_ATPase_Cu-like 266 928 - -
Apr10g0342 953 SFLD p-type atpase 607 884 IPR044492 -
Apr10g0342 953 Gene3D - 636 765 IPR023299 GO:0000166
Apr10g0342 953 Gene3D - 90 169 - -
Apr10g0342 953 ProSiteProfiles Heavy-metal-associated domain profile. 24 90 IPR006121 GO:0046872
Apr10g0342 953 TIGRFAM TIGR00003: copper ion binding protein 101 161 IPR006122 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0342 Apr-Chr10 8266531 8273690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0342 19 947 Primary Pumps ATPases AT1G63440 56.364 0.0 1055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0342 K17686 - gmx:100793894 1686.39