Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0335 ATGGACGAGGATTTCGACATGCCGGCGCCGGAGTCCATGAACGACGACTTCGACTTCGCCGGCGGCGATATCGACGTCGACTACCCTGTCCTCAAGGTCGGCGAGGAGAAGGAGATTGGGAAACAAGGCTTGAAGAAGAAGCTCCTTAAAGAAGGCGAAGGATGGGACGCACCTGAAGTTGGTGATGAAGTTCAAGTTCACTATACTGGGACATTGCTTGATGGCACAAAGTTTGATTCCAGCAGAGATAGGGGAAGCCCTTTCAGTTTCACGCTTGGACAAGGGCAAGTTATTAAAGGATGGGATCAAGGTATTAAAACAATGAAGAAAGGTGAAAATGCTCTTTTTACCATCCCGCCTGAGCTGGCTTATGGTGAATCTGGTTCTCCACCACCAATTCCTCCCAATGCGACACTCCAATTTGATGTGGAGCTGCTGTCTTGGACTAGTGTGAAGGACATATGTAAGGATGGGGGTTTATTTAAAAAGATACTTACTGAGGGGGAGAAATGGGAGAACCCCAAGGATCCTGATGAAGTATTAGTTAAGTATGAAGCATGTCTTCATGATGGAACACTGGTTGCAAAATCTAACGGAGTGGAGTTCACAGTCAAAGATGGTCATTTTTGTCCTGCATTATCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTCTGACTGTGAAGCCCCAATATGGATTTGGTGAGAAGGGCAAGCCAGCACATGGTGATGAAGGTGCAGTTCCACCAAATGCAACATTGCAGATTACTCTTGAATTAGTTTCTTGGAAGACTGTGTCAGAAGTAACTGATGACAAGAAGGTCACCAAAAAGATCCTCAAGGAAGGAGAAGGATATGAACATCCAAATGAGGGAGCCATTGTGAAATTGAAAGTAATTGGTAAGCTGCAAGATGGTACTTTGTTTTTGAAGAAGGGCCATGATGATGAGTCGGAGCTGTTTGAATTCAAAACAGATGAGGAGCAAGTAATTGAAGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTGAGGTAGCATTGTTGACTATTTCACCTGAATATGCTTTTGGTTCATTGGAGTCTCAGCAGGAACTGGCAGTGGTTCCACCAAACTCCATTGTGCATTATGAGGTTGAGCTAGTATCATTTGTGAAGGAGAAGGAGTCCTGGGACATGAACACCCAAGAGAAGATTGAAGCTGCTGGCAAGAAGAAAGAAGAAGGGAATGGATTATTTAAAGCTGGTAAATATACAAGAGCTTCGAAAAGATATGAGAAGGCTGTTAAGTTCATTGATTATGATTCCTCCTTCAGTGAAGAGGAGAAGAAGAACTCCAAAGCCTTGAAGGTTGCCTGCAATCTAAACAATGCAGCATGCAAGTTGAAGTTCAAAGATTACAAACAAGCAGAGAAATTGTGTACAAAAGTACTGGAGCTTGAGAGTACCAACGTAAAGGCTCTCTATAGAAGGGCCCAGGCATATATCCAGTTGGCAGATTTAGATTTGGCTGAATTTGATATCAAGAAAGCCCTGGAGATTGACCCTGACAACAGGGATGTCAAGTTGGAGTACAAGACTTTGAAGGAAAAGGTGAAGGAGTATAATAAAAAAGAGGCAAAATTTTATGGAAATATGTTCAACAAAATGCATAAACTAGATTCGGTTGACAGTTATAAATCTGCGTCCAAGGATGCCCAACCCATGAATATCGATAGCCCGGCATAA 1734 0.4314 MDEDFDMPAPESMNDDFDFAGGDIDVDYPVLKVGEEKEIGKQGLKKKLLKEGEGWDAPEVGDEVQVHYTGTLLDGTKFDSSRDRGSPFSFTLGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPPIPPNATLQFDVELLSWTSVKDICKDGGLFKKILTEGEKWENPKDPDEVLVKYEACLHDGTLVAKSNGVEFTVKDGHFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAHGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVTKKILKEGEGYEHPNEGAIVKLKVIGKLQDGTLFLKKGHDDESELFEFKTDEEQVIEGLDRAVLTMKKGEVALLTISPEYAFGSLESQQELAVVPPNSIVHYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNGLFKAGKYTRASKRYEKAVKFIDYDSSFSEEEKKNSKALKVACNLNNAACKLKFKDYKQAEKLCTKVLELESTNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKVKEYNKKEAKFYGNMFNKMHKLDSVDSYKSASKDAQPMNIDSPA* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0335 577 Gene3D - 33 151 IPR046357 GO:0003755
Apr10g0335 577 Coils Coil 520 540 - -
Apr10g0335 577 MobiDBLite consensus disorder prediction 1 20 - -
Apr10g0335 577 Gene3D - 267 389 IPR046357 GO:0003755
Apr10g0335 577 ProSiteProfiles TPR repeat profile. 487 520 IPR019734 GO:0005515
Apr10g0335 577 PANTHER PEPTIDYLPROLYL ISOMERASE 386 557 - -
Apr10g0335 577 PANTHER PEPTIDYLPROLYL ISOMERASE 1 272 - -
Apr10g0335 577 PANTHER PEPTIDYLPROLYL ISOMERASE 275 386 - -
Apr10g0335 577 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 275 386 - -
Apr10g0335 577 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 272 - -
Apr10g0335 577 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 386 557 - -
Apr10g0335 577 Gene3D - 152 266 IPR046357 GO:0003755
Apr10g0335 577 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 177 266 IPR001179 GO:0003755
Apr10g0335 577 SMART tpr_5 453 486 IPR019734 GO:0005515
Apr10g0335 577 SMART tpr_5 487 520 IPR019734 GO:0005515
Apr10g0335 577 SMART tpr_5 404 437 IPR019734 GO:0005515
Apr10g0335 577 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 294 387 IPR001179 GO:0003755
Apr10g0335 577 SUPERFAMILY TPR-like 392 552 IPR011990 GO:0005515
Apr10g0335 577 SUPERFAMILY FKBP-like 270 404 - -
Apr10g0335 577 SUPERFAMILY FKBP-like 152 269 - -
Apr10g0335 577 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 172 263 IPR001179 GO:0003755
Apr10g0335 577 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 288 384 IPR001179 GO:0003755
Apr10g0335 577 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 58 146 IPR001179 GO:0003755
Apr10g0335 577 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 61 149 IPR001179 GO:0003755
Apr10g0335 577 SUPERFAMILY FKBP-like 36 154 - -
Apr10g0335 577 Pfam Tetratricopeptide repeat 487 520 IPR001440 GO:0005515
Apr10g0335 577 Gene3D Tetratricopeptide repeat domain 390 547 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0335 Apr-Chr10 8182944 8190141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0335 1 553 Calmodulin-binding Proteins AT3G25230 80.108 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0335 K09571 - gmx:100794411 1008.82