Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0332 ATGGAAAACCAGTTCTTTTTGAATGCTGGGGTGTCCCAACACCCCCTTCACTTTGAACCTTCACCAACACCACCACCGCAAACACTACCTCTTTCTTCAATGTCCACGTGGCAACCGCTCTCATCATCATCCATGGAAATTCACCCAACAGTTCTGAATTGTTCCTCCGAGCAAACCCAAGATTGCTTTTACAATTGGGACAGGTCAACGGATCATACCCTCCACTTCGATTCTTCAGCACTTAGTTCAATGGTTTCATCACCAGCAGCATCATCCAACCCCAACAACAACAACATTTGCAATGAGAGTTTCATGATAAGGGAATTGGTAGGGAAATTGGGAACTATTGGAGGAACCTCTGATGAGATCTCACAGCATTCTCATAACCCTTTGGTTGTAGCGTCTTCTTACATGAACAATGCCAACAACACCACCCCTTTGAGTTCTCCACCAAAGCTTAACATTGTGAACAGTTTGGTGAAAGAGAATTTGACCAATTTGGGAGCGAAGTCAATGGCTTTGAATTCCACTGTGGCAGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTCTCTTGCTTCGGTAGCAGAAGTTTCAATGATAGGAGTACCCAATTGGTAGTTAACAATGCTGAATTGGCTCCAAGATCTGCACAAGTTGTGGAACAAGGGAAGTTACCAAGAGTTTCAAGTAGTCCATTGCTCAAAACACTTGGATCTCAAATGGGTGCCCAAGAGAACAAGAGTTCTCAGTTTCAGGAGATGGATAGAATGGAAGTGGCAAATTCCCAAGAGGAATCTACAATTTCCGAGCAAATTCCAAATGGGGAAATTGGGGTGAAAACTTCTCCAGATATGAGTTCAAGGAAAAGAAAAGCCTCTTCCAAAGGAAAAGCTAAAGAAACTTTAAACTCTACTAGTCCTACCAAGGGTGTTGAAGGTAGTGAGGACTCAAATGCAAAAAGAAGCAAGACAAATGAGGGTGAGGGAAATGAAAATGGTCCAGTGAAGGCTGAGGAAGAGTCCAAAGCAGGGGAAGAGAAACAGAACAAGAGTAACTCAAAGCCTCCTGAGCCACCAAAAGATTACATTCACGTTAGAGCAAGAAGAGGCCAAGCTACTGATAGCCATAGTCTTGCAGAACGTGTACGGAGGGAGAAAATTAGTGAGAGGATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTCACTGGTAAAGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTCCTGTCTATGAAATTGGCTTCTGTTAACACAAGGATGGATTTTAGTATTGAGAATCTTGTCTCAAAAGATGTATTTCAATCAAATAATTCATTGGCAACACACCAAAATCCAATATTCCCATTAGATTCCTCAGCACCAGCCTTTTATGGGCAACAGACTCAGCAAAACCCAGTTATCCATAATAACATACCTAATAGAACGGTGACCCACTGCTCAGTGGACCCATTAGACACTTCTTTGTGCCAAAATCTTGGCATGCAGTTACCACCCCTAAATGGGTTTAATGAAGGTGGCTCTCAGTATGCATTAACATTCTGTGAGGATGACCTCAACACCATTGTTCAAATGGGATTTGGCCAAACTGCAAATAGGAAAACACCAATACAATCCTCAAGTTTCAACGGTTCAAATCAAGTACCCCAAATGAAAGTTGAGCTCTGA 1734 0.4245 MENQFFLNAGVSQHPLHFEPSPTPPPQTLPLSSMSTWQPLSSSSMEIHPTVLNCSSEQTQDCFYNWDRSTDHTLHFDSSALSSMVSSPAASSNPNNNNICNESFMIRELVGKLGTIGGTSDEISQHSHNPLVVASSYMNNANNTTPLSSPPKLNIVNSLVKENLTNLGAKSMALNSTVAEFSADPGFAERAAKFSCFGSRSFNDRSTQLVVNNAELAPRSAQVVEQGKLPRVSSSPLLKTLGSQMGAQENKSSQFQEMDRMEVANSQEESTISEQIPNGEIGVKTSPDMSSRKRKASSKGKAKETLNSTSPTKGVEGSEDSNAKRSKTNEGEGNENGPVKAEEESKAGEEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDFSIENLVSKDVFQSNNSLATHQNPIFPLDSSAPAFYGQQTQQNPVIHNNIPNRTVTHCSVDPLDTSLCQNLGMQLPPLNGFNEGGSQYALTFCEDDLNTIVQMGFGQTANRKTPIQSSSFNGSNQVPQMKVEL* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0332 577 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 570 IPR024097 GO:0006355
Apr10g0332 577 CDD bHLH_AtBPE_like 365 450 - -
Apr10g0332 577 Coils Coil 422 442 - -
Apr10g0332 577 Gene3D - 372 447 IPR036638 GO:0046983
Apr10g0332 577 PANTHER BHLH TRANSCRIPTION FACTOR 2 570 - -
Apr10g0332 577 SMART finulus 381 431 IPR011598 GO:0046983
Apr10g0332 577 MobiDBLite consensus disorder prediction 242 366 - -
Apr10g0332 577 MobiDBLite consensus disorder prediction 318 366 - -
Apr10g0332 577 MobiDBLite consensus disorder prediction 242 280 - -
Apr10g0332 577 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 375 425 IPR011598 GO:0046983
Apr10g0332 577 MobiDBLite consensus disorder prediction 555 577 - -
Apr10g0332 577 Pfam Helix-loop-helix DNA-binding domain 379 426 IPR011598 GO:0046983
Apr10g0332 577 MobiDBLite consensus disorder prediction 302 317 - -
Apr10g0332 577 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 373 444 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0332 Apr-Chr10 8045562 8048723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0332 1 535 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.458 7.14e-107 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr10g0332 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0332 - - gmx:100801233 816.609