Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0261 ATGCAGTTTGAGGACCTTCCCATAATGTGCAAGCGCCACACGACATCCAAATTGTCTGCGTTTGAAGATTTGCAGCGCATCAAGTCCATGGGGTTTCGAGGTGAGGCTCTCGCTAGCATGACCCATGTCGCTCACGTTATTGTCACTATCATTACCCAAGGCCAATCCCCGGTTACAGGGTTTCCTATGGAGATGGCAACTTTACAACGGAAAGGAAGCCAAGCTGAAGAAGGAATGTTGCAACGCTTAAGAAAGAAGCAAGAACAGTTATCGTTTGACAGAAGTCGGAAATTTCTGGAATATTCTCAAAGAGATGAACTTGAGCGTGTTTTCGGTCGATTTGGACATGGTCATGTTCAGCTAAAGAGAGATGGATATGGCTTTGTAGTGTTTGATTTTCCTCCGGATGCGGAAAAGGCTCTGCGAGTTCTGAAAGGGATGGTAGAAGAAATGCGAATGAGTGAGTTGCAACTTGGGAGGAACTCTGGTAGAGTTGGCTTTGCAAGAAGGAAAGGTGAGGATATCCATGGATCAGCCTCGACCATGAAAACACTTCCAAATGTTACCCAAATTCATACAAACCTTAATCCCAATCCTCTAAAATCATACAAATTCATGGAAAAGGAATTGATTTGGTTGAAATGCAAGGCGAAGCTGAAAGGTGGATTTTATGTCGATCCAGAGGCTAAACTGTTGTTTATTATTCGCATTCTTGGTATTAATGGCATGCGCCCGAAGACCAGAAAGATCTTGCAGCTGTTGCGATTGAGACAGATTTTCAATGGTGTATTTCTCTTAGTTAACAAAGCCATAAAGAACATGCTGCACCGAGTTGAGCCTTATGTGACTTATGGAAACCCAAATCTGAAGAGTGTGAGGGAACTTATATTCAAGAGAGGGTATGGAAAGTTAACAGGGCATGGAGCAACAAAATTTTACTGCAGATGA 948 0.4304 MQFEDLPIMCKRHTTSKLSAFEDLQRIKSMGFRGEALASMTHVAHVIVTIITQGQSPVTGFPMEMATLQRKGSQAEEGMLQRLRKKQEQLSFDRSRKFLEYSQRDELERVFGRFGHGHVQLKRDGYGFVVFDFPPDAEKALRVLKGMVEEMRMSELQLGRNSGRVGFARRKGEDIHGSASTMKTLPNVTQIHTNLNPNPLKSYKFMEKELIWLKCKAKLKGGFYVDPEAKLLFIIRILGINGMRPKTRKILQLLRLRQIFNGVFLLVNKAIKNMLHRVEPYVTYGNPNLKSVRELIFKRGYGKLTGHGATKFYCR* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0261 315 Pfam Ribosomal protein L30p/L7e 232 282 IPR016082 -
Apr10g0261 315 SUPERFAMILY Ribosomal protein L30p/L7e 231 307 IPR036919 -
Apr10g0261 315 SUPERFAMILY RNA-binding domain, RBD 105 164 IPR035979 GO:0003676
Apr10g0261 315 ProSitePatterns Ribosomal protein L30 signature. 250 282 IPR018038 -
Apr10g0261 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 147 IPR000504 GO:0003723
Apr10g0261 315 Gene3D - 1 101 IPR036890 -
Apr10g0261 315 Gene3D - 231 312 IPR036919 -
Apr10g0261 315 PANTHER 60S RIBOSOMAL PROTEIN L7 200 305 IPR039699 -
Apr10g0261 315 CDD Ribosomal_L7_archeal_euk 231 306 IPR035808 -
Apr10g0261 315 Gene3D - 102 171 IPR012677 -
Apr10g0261 315 PANTHER 60S RIBOSOMAL PROTEIN L7 200 305 - -
Apr10g0261 315 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 31 37 IPR014762 -
Apr10g0261 315 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1 56 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0261 Apr-Chr10 6287014 6296121 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0261 201 305 Cytoplasmic Ribosomal Protein Gene Family AT2G01250 80.952 3.93e-52 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0261 K02937 - tcc:18590033 165.236