Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0246 ATGACATCTGATGATGAAAGGAGAGTATGTCGCCTTTCAGAAAGTAATTTGACTCCCTTCAATGTCAATATTTTGGTGGTTGATGGTGATGCTGCTTCTCTAGACACAACAATGGAGATATTAACTTCCTTGAACTACACAGGTACTACACACTCCTCAGTTGCTTTAGAAAAACTTCGAAATAATGAAGAATATTTTCAACTCATTGTTACTGAAGTTCACATGCCAAATCTCGACGGATTCAAATTGAAAGAAGTAGTTGAAAAAGAATTTACAATTCCAATTATAATGATTTCATTTGACAACAATGAGAAAATCCAAGAAAAAGCTCTAGCATCTGGTGTAGTGCGTTATATCATAAAACCAGCAACACTAGAGGACTTCAAAGGTATTTGGCAATTTGCAATTTCTGGAATGAAAGGTAAAGAGCCAATTAACACAAAAATAATGAGAAATATTATCGAAGAATCAAGTTGTGGGAGAAAGCATCACAAAGAGTTGAGATCTTCAACACTAAAAGAAAAACTAGTTAGCCAAAAGAGTGATATGGGAAAAGAATCAACAAACACTTTGGAAAATAATGGATTTGGTACCGAAAAGAAGATCAAAGTTGTTTGGACAAATAAACTTCAAAGCAAATTCATGGAAGCCATAAATATTATTGGCTTAAAGAATGCAGTTCCCAAAAAGATTCTCCAAGTCATGAATGTTGAAGGGTTAACTAGAGAAAATGTGGCAAGTCATTTGCAGAAACATCGACTTTTTTTAAAGAGAGTTACAGGTTTGTTTGTCATGATTGTAAACAAAGCAAAGGAAGACAATGATATCCTTTTGTCTAAGATGGCATCAGCATACCCAGCATTGATGTTGCAAATCATTCAAGAAGATATGGAAAAAACTATAAAGCAAAGTGGAAGGAGAAATTTAAATTTAGAATCCAACAGCACATACATTGCGCACTTAAGATTCAAGTTATCTTGGTTATTGAGTAATGATGTTACTAACTCTACGCAACATTGTCATAGCAAAATGGATCCTCATGTTAATAATGTAGAGGTTTCATCAAGCAAAATCAATAACCTTGGTATCACAACCAATCCAACTACACTATACCATTCATATCTCAATGTGAATGATGCATATAAACTTAGAAGTGGTTCAAATTTAGGGCAAAATATTTACAATCGGCCATCTCAAAACTCTCCAATTAGCCCTTCAGGATTAGCTAGTAATAAGTTCAACAACACAGTAGGACTATGTCAAACATCAAGCTCAAATTTATCTAATTGCAATGCTATAACAACTTTTCAAGGAAGGAATGGGTCAAAAGGACTCTTGATACCAAATGATAGTAGTTTGGTTGGAGTAGTGTCTGCTACCAATGAGGTTAATAGCACAAATCAATCTTCCCCTGTATCAATGGACAATAACATTAAAAACATTGACATGAAGGAGTTATTTCGGCCTCAACAACCTCAGCATCAGATTCATAGTCAAAGATATCATCAAATTTCAGCAACAATGAATAACACTATTGCTTCTCAAGTAACTTCTGATGAATCCTTTTTCGAAGGACTTGATGATGATTCTTTTTCAGTGGAAAACATTCTTAATCAAGTCACTATGCAGTTGGAATGGGACTATGGCTTCATTGAATCCATTCTCAACGATATGGCGTAA 1680 0.344 MTSDDERRVCRLSESNLTPFNVNILVVDGDAASLDTTMEILTSLNYTGTTHSSVALEKLRNNEEYFQLIVTEVHMPNLDGFKLKEVVEKEFTIPIIMISFDNNEKIQEKALASGVVRYIIKPATLEDFKGIWQFAISGMKGKEPINTKIMRNIIEESSCGRKHHKELRSSTLKEKLVSQKSDMGKESTNTLENNGFGTEKKIKVVWTNKLQSKFMEAINIIGLKNAVPKKILQVMNVEGLTRENVASHLQKHRLFLKRVTGLFVMIVNKAKEDNDILLSKMASAYPALMLQIIQEDMEKTIKQSGRRNLNLESNSTYIAHLRFKLSWLLSNDVTNSTQHCHSKMDPHVNNVEVSSSKINNLGITTNPTTLYHSYLNVNDAYKLRSGSNLGQNIYNRPSQNSPISPSGLASNKFNNTVGLCQTSSSNLSNCNAITTFQGRNGSKGLLIPNDSSLVGVVSATNEVNSTNQSSPVSMDNNIKNIDMKELFRPQQPQHQIHSQRYHQISATMNNTIASQVTSDESFFEGLDDDSFSVENILNQVTMQLEWDYGFIESILNDMA* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0246 559 MobiDBLite consensus disorder prediction 160 181 - -
Apr10g0246 559 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 257 IPR017930 -
Apr10g0246 559 Gene3D - 198 260 - -
Apr10g0246 559 SUPERFAMILY Homeodomain-like 200 258 IPR009057 -
Apr10g0246 559 SMART REC_2 22 132 IPR001789 GO:0000160
Apr10g0246 559 Gene3D - 21 157 - -
Apr10g0246 559 ProSiteProfiles Response regulatory domain profile. 23 136 IPR001789 GO:0000160
Apr10g0246 559 Pfam Response regulator receiver domain 24 128 IPR001789 GO:0000160
Apr10g0246 559 MobiDBLite consensus disorder prediction 160 192 - -
Apr10g0246 559 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 201 255 IPR006447 GO:0003677
Apr10g0246 559 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 516 IPR045279 GO:0009736
Apr10g0246 559 PANTHER RESPONSE REGULATOR 23-RELATED 22 516 - -
Apr10g0246 559 SUPERFAMILY CheY-like 22 139 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0246 Apr-Chr10 5826603 5831812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0246 19 262 Response Regulator Gene Family AT2G25180 34.572 2.62e-41 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr10g0246 Response_reg 3.2e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0246 - K14491 aprc:113850659 1103.2