LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g0212	ATGGCTAAGTTTGAGTCAGTGCCGTTTGCTGTTGCATCAAATCTTATTCACAGGCTAGCTTCCCCAGATTTTCTTGAATTTGGACAGCAGTATGGTGTGATGGAAGAGTTGGAAGCGCTTAAGAAGACAATTGGATCTATCAATGATGTGCTCCTTGATGCTGACCACAAACAAGATCAAGTTCGCGTGCGTAATTGGATATCTGACTTCAAAGAAGTAGTTCATACCGCAGATAACTTCTTAGATCACCTTGCTATCGAATTTATGAGAGACAAAATGGATGCAGCAGAAGGAAAAGAAGTAAACAAGGTACTTCGTAACATTTCATCTTCAAATCAATTTCCTTTATACAGTGAAATGCCTGACAAATTTAAAGAAATACGAGAAAGTTTTAAAGATGTAGTAAAAGAAATGAAGGATTTGAATTTAAGTCCAAGATCTGGGGTGGTCAAGAAAACTAACACTGAATGGAGGGAAACATGTTCTTTTGTGTTAGAATCTGATATCATTGGAAGAGATGATAGTAGAAAGGAGATTATTAGTCTGTTGAGACAACCTCATGAGAACCAAAAAGTTCCTGTAATTGCCATTGTTGGCCTTGGTGGCTTGGGGAAGACAACTCTTGCTCAATTGGTGTATAATGACTTGGAAGTGCAGAATTTGTTTGAAATGAAAATTTGGGTATGTGTCTCTGATTACTTTGACGTGAAAACTATTCTTAAGAAAATATTAGAATCAATTACAGGTGACCAAATTGAAGTATCATTGGGCACCTTGCAAAGAAAACTTCATGAAAGAATAGGAGGTAGGAAATATTTGTTGGTCCTGGATGACATTTGGAATGAGAGACATGACAAATGGGCTGAATTGAGAAAGTACCTGATGTGTGGCGCTCAAGATAGTAAGATCTTAGTGACCACTCGAAGTGAAAATGTAGCAAAGGCAATGACTGCTAGCACTTCCTATCCTTTGAAAGGTTTGACTGATGAAGCATCTTGGAATTTGTTGAAGAGCATTGCATTTGAGGATGATTCCAAAGGAGTGAATCAAAATCTAGAATCAATAGGGAAAGAAATAGCCAAAAAATGTAAAGGGGTTCCACTGGCAGTTAAAACGCTGGGAGGCCTGTTGCGAGGACAAAACGAAGAAAGTGAATGGGAGAATGTTTTACTTGGTGACTTCTGGAAATTATGTGAAGAGCAAGATAGTATCATGCCAATTCTAGAACTCAGTTACCGCAACTTGTCGCCAGAAATGAGACAATGTTTTGCTTATTGCTCTTTGTACCCCAAGGATTCAAAAATTCCAAAAGATGAGTTGATTCAGTTATGGATGGCACAGGGTTACCTTCAATGTTCAACTGAAAAACAGCACATGGAGGATGTCGGTAATCAATTTGTAAAGATGTTTTTGATGAACTCAGTTTTTCAAGATGCAGACACTGACAAAAACGGTGAGATCGTTAGTTTCAAAATGCACGATTTAATGCACGATCTTGCAATGCTAGTAGCTGGCAGTGATTATTGTTACTTGGATAGTAAGGCAGAAAAAGTTGAAGGTAGACCCATGCACGTGTCATTGGAATCCAATGAGACCATTCATTTGTTGAAATCGTTAGATCCGAGCAGGCTGCGAACTTTGATTTTGCCGTATGACTTGGAAGAGAATGAGGAGCCGGATGACTTCAAAGAGGAGGAATATTTGTCGGTTATTGCAGAGTTCAAATATTTACGTGTTTTGAGGATGCATCAGCTCTCTGATTCCACGGAAAATTGGAAGCATTTAAGATACCTCGCTTTAACGCAACAAATAAGTCTTCCCAAATCTATGAGCAATCTTGTTTTTCTGCAAACGTTGAAATTGGAGAAGTACCATGAAGAATCATTCTCAGAAGTAGTCACAAAATTAGTCAATTTGAGGTGCCTTGATATTGCTAATTATAAATTCATCAATGGGATGGCAGTTGGGTTGGGAAAATTATCCTCATTGCAATTCCTATCGACCTTTGTTGTGGGAGACAGCCAAGAAATAAAGTATGCCACATTAAATGAACTGAAGAACTTAAACCTCAGAGGCAGATTAAAAATTAAGCATCTCAATCGTGTCAGAGAAGTGGCTCTGGAATCACAGCACGTAAATTTAAAAGAAAAAAAATTCCTTCGTTACTTGATTCTGGATTGGTCGCGTGAAGACCTCCGTAACACTGACAACTTGCAATTATTGGAAAACCTTGAGCCCCACCGTAATCTTAAGCAATTGAAGGTCTATTATTATCCAGGCGTGCTTTTCCCAAATTGGCTTTCTCTCCTCACAAATGTTGTTGACATTCGTCTCTATGAGCTTCGTAAATGCTGCTATCTCCCACCGTTGGAACATCTCCCGTCCCTGAAGTCACTGGTGATGAAGTATCTTGATGAATTGGAATACATATATCTCTACGAAGATGGTTTTACAGTAACCTTCTTCCCCTCTTTGGAGATCCTCACATTATGGGGTTGTCCCAAGCTCAAGGGATGGCGGAGGCGGGGAGATGATATCAATGATTCACATCATCTCTCCTTACCTCTTTCATTTCCTCATCTTTCTCAACTACACATCTCTGGCAGTCCACATTTGACCTGCATGCCTACTTTTCCAAACGTTGAGAATTTGGAATTGGAACAATGCAGTGCAGAACCATTAATAGCAACACTAAACTCAACATGTTCAGCTGACTCATCTTCCTCCGCTGCTCCTCTTTCCATGCTCAAATACATGTACATTTCTGATCCTATGAATTTACCAAAGGGTTGGATGCAAAATCTGACTTCTCTCGAGTCTCTTGGTGTTGGAGGTGGAAGTGAAACACTTGAGGAATTTGAAACTGGATTTGCAGCCTCTCATCGATTCAACACATCAACATCCGGCTTTGCCCAGAATTGGCATTGCTGCCCGAAGGAATGA	2943	0.3965	MAKFESVPFAVASNLIHRLASPDFLEFGQQYGVMEELEALKKTIGSINDVLLDADHKQDQVRVRNWISDFKEVVHTADNFLDHLAIEFMRDKMDAAEGKEVNKVLRNISSSNQFPLYSEMPDKFKEIRESFKDVVKEMKDLNLSPRSGVVKKTNTEWRETCSFVLESDIIGRDDSRKEIISLLRQPHENQKVPVIAIVGLGGLGKTTLAQLVYNDLEVQNLFEMKIWVCVSDYFDVKTILKKILESITGDQIEVSLGTLQRKLHERIGGRKYLLVLDDIWNERHDKWAELRKYLMCGAQDSKILVTTRSENVAKAMTASTSYPLKGLTDEASWNLLKSIAFEDDSKGVNQNLESIGKEIAKKCKGVPLAVKTLGGLLRGQNEESEWENVLLGDFWKLCEEQDSIMPILELSYRNLSPEMRQCFAYCSLYPKDSKIPKDELIQLWMAQGYLQCSTEKQHMEDVGNQFVKMFLMNSVFQDADTDKNGEIVSFKMHDLMHDLAMLVAGSDYCYLDSKAEKVEGRPMHVSLESNETIHLLKSLDPSRLRTLILPYDLEENEEPDDFKEEEYLSVIAEFKYLRVLRMHQLSDSTENWKHLRYLALTQQISLPKSMSNLVFLQTLKLEKYHEESFSEVVTKLVNLRCLDIANYKFINGMAVGLGKLSSLQFLSTFVVGDSQEIKYATLNELKNLNLRGRLKIKHLNRVREVALESQHVNLKEKKFLRYLILDWSREDLRNTDNLQLLENLEPHRNLKQLKVYYYPGVLFPNWLSLLTNVVDIRLYELRKCCYLPPLEHLPSLKSLVMKYLDELEYIYLYEDGFTVTFFPSLEILTLWGCPKLKGWRRRGDDINDSHHLSLPLSFPHLSQLHISGSPHLTCMPTFPNVENLELEQCSAEPLIATLNSTCSADSSSSAAPLSMLKYMYISDPMNLPKGWMQNLTSLESLGVGGGSETLEEFETGFAASHRFNTSTSGFAQNWHCCPKE*	981

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g0212	980	Pfam	Rx N-terminal domain	15	99	IPR041118	-
	Apr10g0212	980	Gene3D	-	154	322	IPR027417	-
	Apr10g0212	980	Gene3D	Ribonuclease Inhibitor	556	945	IPR032675	-
	Apr10g0212	980	SUPERFAMILY	L domain-like	491	939	-	-
	Apr10g0212	980	Gene3D	-	412	501	IPR036388	-
	Apr10g0212	980	Gene3D	-	326	411	IPR042197	-
	Apr10g0212	980	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	155	426	IPR027417	-
	Apr10g0212	980	PANTHER	DISEASE RESISTANCE PROTEIN RP	37	888	IPR044974	GO:0006952
	Apr10g0212	980	PRINTS	Disease resistance protein signature	194	209	-	-
	Apr10g0212	980	PRINTS	Disease resistance protein signature	266	280	-	-
	Apr10g0212	980	PRINTS	Disease resistance protein signature	363	377	-	-
	Apr10g0212	980	PRINTS	Disease resistance protein signature	634	650	-	-
	Apr10g0212	980	PANTHER	OS05G0414200 PROTEIN	37	888	-	-
	Apr10g0212	980	Pfam	NB-ARC domain	176	413	IPR002182	GO:0043531
	Apr10g0212	980	Gene3D	-	12	141	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g0212	Apr-Chr10	4956945	4959887	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr10g0212	192	450	WRKY Transcription Factor Family	AT5G45050	25.000	4.49e-08	55.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g0212	-		-	aprc:113850108	1285.01