Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0157 ATGGACGCCAAGATTGACATTGCAGACAAAAAGGTGCTGGTTGATATGGTAAAATTGTCACAAAAAAGGGGCCTGAAGGGTAAACTGGGAGACTGGAAAGAATTCTTGAACAGTTATGACAAAAAGTTTGGAGCTGGTTTGAGTGACCCAGCAAAGAGATCCCATGAGACATTGGCTGCATTTCTAAAGACATTTTCAAAGGAGGAAGATTTGAAGTTTTTTTATAACATCATACGGCATCATTCAAACCAATACACATTGGAGCAACTGAAAGATAAATCTCATGATTCCCCTGAGCAGAGGCTAGTCCAAGTAACTCTCCGGCATCCATTATACCCATTGGATTATTCATTTTCATCAATTGATGAGGGTTGGGTAATTATAAACCTTAAAAACAAATCCAAGGTGATGAAGTCTACTGAAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGATGCATTAGTCAAAGTCTGTGTCGTAGACCATAATTTAGAGGTGAAATTAAATGAACTTGTAAAACCTGACAAAGGAATTGCAGATTACAGAACAGATGTTACCGGCGTCTCTTCTCAAGATCTAGAGACAGTGACTTGCTCCTTGGCTGATGTACAGAAATCCATAAAGAAGTTGTTATCAAAGGGAACCATATTAGTGGGACACAGTTTACATAATGATCTACATGTGCTGAAGCTTGATTATGTTAGAGTGGTTGATACTTCATATATCTTCCAATCCTTGGATGGATCTATTCACAGGAGACCTTCTTTGAATAGTTTATGTCAGGCTGTGTTAGGATATGAAGTTCGGGAAAAGGGTGCTCCACATAATTGTCTAGATGACGCATGTGCAGCTATGAAACTTGCTCTTGCAAAGATCAAACATGGTGTTGATAAAGAATTTCGGATTTCATTAGTTCAAGAACCTGTTTCAGAAAGTGAGATGGCAAAGCTGCTTCTTCACAGGATTCCAAACACTGTGGACAGTGAAACACTGCATAAAATTGTGCCTGGATTCTTTGATATAGAACTGAAGCCTTCCAGGAAAGGTCAAGGTCAAAATTATTCTGCCCTAGTTATCTTTAAGAACCCACAAGAGGCACATAATGCCTTTGTAAATGTCAAAGGCATCCAACAAAAGGATTCATATGGACGGCCACAGAAACTTGTCACACATCGGCTAAGTTCAGGCATGTCTGTCACACTGTTTGTTCGGAAAATGGCAATTGATGAACCCCAGGACCAGGTTCCATCTAAGAGGGCTTTGCAAGTGGATGAGGAAATTGATGTTTCCAAGAAAGCAAAGGTGGATCCAAAAATTGAAGAGGATGCCCCAACAGGGTCTGGCAAGTGTGACATTGACTCCCATTTGAGTGAGATTGAAGCACTGAATCAACAATTGAAGCAAAGTGAGTTGGAGATTGAATCATTGAGGAAACAGATGACACAAAAGGATTTTGAAATCTCCATGCTGCATAAAATGATAACCTCCTTGAAAAAACGTAAGTAA 1521 0.3971 MDAKIDIADKKVLVDMVKLSQKRGLKGKLGDWKEFLNSYDKKFGAGLSDPAKRSHETLAAFLKTFSKEEDLKFFYNIIRHHSNQYTLEQLKDKSHDSPEQRLVQVTLRHPLYPLDYSFSSIDEGWVIINLKNKSKVMKSTEMVAVDCEMVLCEDGTDALVKVCVVDHNLEVKLNELVKPDKGIADYRTDVTGVSSQDLETVTCSLADVQKSIKKLLSKGTILVGHSLHNDLHVLKLDYVRVVDTSYIFQSLDGSIHRRPSLNSLCQAVLGYEVREKGAPHNCLDDACAAMKLALAKIKHGVDKEFRISLVQEPVSESEMAKLLLHRIPNTVDSETLHKIVPGFFDIELKPSRKGQGQNYSALVIFKNPQEAHNAFVNVKGIQQKDSYGRPQKLVTHRLSSGMSVTLFVRKMAIDEPQDQVPSKRALQVDEEIDVSKKAKVDPKIEEDAPTGSGKCDIDSHLSEIEALNQQLKQSELEIESLRKQMTQKDFEISMLHKMITSLKKRK* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0157 506 SMART exoiiiendus 141 302 IPR013520 -
Apr10g0157 506 Pfam Exonuclease 143 292 IPR013520 -
Apr10g0157 506 PANTHER SMALL RNA DEGRADING NUCLEASE 2 11 433 - -
Apr10g0157 506 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Apr10g0157 506 CDD REX1_like 143 294 IPR034922 -
Apr10g0157 506 Coils Coil 457 491 - -
Apr10g0157 506 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 433 - -
Apr10g0157 506 CDD RRM_SF 322 380 - -
Apr10g0157 506 Gene3D - 137 312 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0157 Apr-Chr10 3966906 3980783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0157 118 273 C2H2 Transcription Factor Family AT3G27970 30.000 1.08e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0157 K14570 - gmx:100785565 817.379