Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0145 ATGGCTTCTCCTCCACCCTTAACGCTAAACGTCGTCGGATCAGACACGTTCCCAACAGTTTCAAGTTCGCTGACACCACCTTCTCCTCGCCGTTCCTCTCCGTTACAGAACCTCAGTCCCAGCATTCTCATCATCGTAACGGTCCTTGCCGTCACCGTCATCATCTCCCTCGCACTCTGTTTCCTACTCCGTCACCTCAACCGCCGCTGCCTCCGCCGTTTCTCTTCTACCTCCGCCGCTCCATCCGCCGCCGCCACGCCTATTTTCACCTCCAGCCGCCGAATATCGCCGGAAATCCCTCATTCGTCCACTTCCGTCATTGACTCGCTCCCTCTCTTCACCTTCTCCTCCGTCACGCGCCGTTCCGCCGCCGTCGCCGGGGACTGCGCCGTGTGCCTCTCGAAGTTCCGCCACGACGACCTCCTCCGCCTCCTCCCTCTTTGCTGCCACGCCTTCCACGCGGAATGCATCGACACGTGGCTCCAATCGAACCTCTCGTGCCCGCTCTGTCGCTCCGCCATTGTCGCCGCGGATTCCGACCTCGCCAAGGTTCTCCGACCGCCGTCGTCCGCCGCCGGAAGCAGCGACAGTTTTCGCCTCGAGATAGGGAACATCAGCCGCCGCGGAACCGAAGGCGCCGCCGATGGTGGTGGCGTGCGCGGCGGTTCGAGGTCAAGGTCCTATTCCATTGGATCGTTCGACTATTTGGTGGACGACGAATCGGAGGTTCCGTATAGTCACGCTCGACGGAGGAGCGTGGACGATCATAAAGAGTTCCCGGTGGCGTCGGAGGCTCCCGGGACTCAGCATGAAGCGAGTCTCGCCGGCGAAGTTGCCGGCGTTAGAAGCTGGCTTAAAGATTACATGGATAGGGTTTCGGCTTCTATTTCGTCTCGAACGGCGTCGTTTCGAAGTTCTGGAAGGTTCTTCAGTGGTGGGAGTAGTCGGCGAAGCGACGTCGTTCCGGTCGCTGCGGATTATGACTTGGAAGGTAACCGAATTGGGGAAGAGATCAGCGAGATGTTTCGTTGGCTTTCAGGGGTATGA 1047 0.596 MASPPPLTLNVVGSDTFPTVSSSLTPPSPRRSSPLQNLSPSILIIVTVLAVTVIISLALCFLLRHLNRRCLRRFSSTSAAPSAAATPIFTSSRRISPEIPHSSTSVIDSLPLFTFSSVTRRSAAVAGDCAVCLSKFRHDDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSAIVAADSDLAKVLRPPSSAAGSSDSFRLEIGNISRRGTEGAADGGGVRGGSRSRSYSIGSFDYLVDDESEVPYSHARRRSVDDHKEFPVASEAPGTQHEASLAGEVAGVRSWLKDYMDRVSASISSRTASFRSSGRFFSGGSSRRSDVVPVAADYDLEGNRIGEEISEMFRWLSGV* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0145 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 320 - -
Apr10g0145 348 SUPERFAMILY RING/U-box 107 176 - -
Apr10g0145 348 Pfam Ring finger domain 128 171 IPR001841 -
Apr10g0145 348 SMART ring_2 129 170 IPR001841 -
Apr10g0145 348 CDD mRING-H2-C3H2C2D_ZSWM2 129 171 - -
Apr10g0145 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 180 IPR013083 -
Apr10g0145 348 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Apr10g0145 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 2 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0145 Apr-Chr10 3630468 3631514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0145 19 200 C3H Transcription Factor Family AT4G28890 33.690 2.94e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0145 K10663 - gmx:100817751 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0145 10 3630468 3631514 Apr10g0145 10 3630468 3631514 ECH