Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0126 ATGCAATATAATAATGTTTTTGCTACTACTAATAGTAGCCTATCATCTGAGGATGCAAGCTATGATGAGAAGCATGGTAAGAGTAATAGCTCAAACTCCATAATCTCTCAAGATGTTGCTTCACACAAACATTCAGCACCGTCTCTATCCACCTTCATTTTGTCGTTTGAAAACTCATCGGTGGAACCAGCTCTCCAAGATAGACCCAACAACTCCCCTAAACATTTTGGTGGGGATGCTACATGTTCTTCCATCATGTCTTCAAAAAGAACATTGGGTAACCATATCACTAAGCCCAAGGTCAAGCAAGGAAACAAGAAATTTAGAAGCTCATCAGAGATTCAAGATCACATATTGGCCGAGAGAAAAAGGAGGCAAGAACTCACTGAGAGGTTCATAGCACTTTCTGCCACCATACCCGGATTGAAGAAGACAGACAAGGCCTATATACTTCGTGAAGCAATAAATTATATGAAACAACTTCAAGAGCGAGTGGAAGAGCTAGAGAATCAAAACAAGAGAAGAAGAACAGATTCAGTAATATGTATAAAGAAATCCAAGGTTAGTGCAAAAGAGGAATCCACGTCGTGTGAAAGAAACTTTGATAGTGGATATCGATCTCCAACGCCATTACCTCAAGTTGAAGCAAGAGTCTTGGAAAAGGAAGTTCTCATTGGAATCCACTGTGAGAAACAAAAGGATATTGTGCTCAAAATCATGGCCTTGCTTCAAAATCTTCATCTTTCTCTTGCTAGCAGTAGTGTATTGCCATTTGGAACCTCCACTCTCAAAGTTACAATCATTGCTCAGATGGACGATAAATACTGCCTTACAGTGAATGATTTAGTAAAAAGCCTAAGGAAAGATCTCTTAAAGTCACATGGCATTCAAAAATAA 897 0.3902 MQYNNVFATTNSSLSSEDASYDEKHGKSNSSNSIISQDVASHKHSAPSLSTFILSFENSSVEPALQDRPNNSPKHFGGDATCSSIMSSKRTLGNHITKPKVKQGNKKFRSSSEIQDHILAERKRRQELTERFIALSATIPGLKKTDKAYILREAINYMKQLQERVEELENQNKRRRTDSVICIKKSKVSAKEESTSCERNFDSGYRSPTPLPQVEARVLEKEVLIGIHCEKQKDIVLKIMALLQNLHLSLASSSVLPFGTSTLKVTIIAQMDDKYCLTVNDLVKSLRKDLLKSHGIQK* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0126 298 Coils Coil 151 178 - -
Apr10g0126 298 PANTHER BHLH TRANSCRIPTION FACTOR 20 296 - -
Apr10g0126 298 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 20 296 - -
Apr10g0126 298 MobiDBLite consensus disorder prediction 1 32 - -
Apr10g0126 298 Pfam Helix-loop-helix DNA-binding domain 117 162 IPR011598 GO:0046983
Apr10g0126 298 SMART finulus 118 167 IPR011598 GO:0046983
Apr10g0126 298 MobiDBLite consensus disorder prediction 1 17 - -
Apr10g0126 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 161 IPR011598 GO:0046983
Apr10g0126 298 Gene3D - 104 178 IPR036638 GO:0046983
Apr10g0126 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 177 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0126 Apr-Chr10 3336512 3340007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0126 42 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.308 1.25e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr10g0126 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0126 - - aprc:113850585 581.637