Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr10g0117 | ATGAATTCTTCTGGCTACGAATACGATCAACCCCAACCCTCTTCGGTTTACCCTCCTCGCCTCCCAATCGCCCCTGAACCGCCTAATTCTGCTCAACCCTCACAAACCCACAAGCTCAACCCGGTTCAGGGACCGCCAGTTCCCGGTTCCGTTAAACCTGCGGCAGCGGCAGCGGTAGCAGGAGCTCTCCCTCAGCTTGTAGGGAGCGTTGACGGAGTCCGGAGAGAACCGATTGGGCTATCTCAATACAGAGGTAGAGGTCGCAGGGGTGGTCGACAATTTAGAGGTGTTGGGCGTGGCCGAGTGAATCACCCCCATGGTAGGGGACTGAATCACCCCCGTGGTAGGGGACGTGGTAGGGGTGGTAATGGTAGACAGTTCCCATCTCATTCTTCTGAACCCTCCATTTCTAATAAAGCTGACACAGCTGGTGCTGCTGGAGCCACTTCGGTGGTGCAACCATCATCAGTCCCCCGGAAGTCACCATTAACTAATCCAGCACAAATTCCTACTGCATCATTGCAGGTCCCACCATGTAAGTTGTGGTGTGAAATTTGTAAGGCAGAGTGTAATACTCCAGAAATGTTGGAGCAGCATAAGAATGGAAAGCGGCATCGGAAGAATTTGCTAGTGCATGAAGAATTGCAAAGACTCAGAGCTATAAATGGACAACAGGGTGAAAGTATTTCTAATTCTCGATCAAATTTAACAATCCAGCCTGAGAAAGTTCACAATGCTGAAGCTACAGCTGATAATCACAAGGCTGAAACTGAGGTTTGGAATAATGTGGGAGGAAAATCTGATGTTCAATCTGAAGAGCTTCAGGAGGAACCTGGAGAAAAAGCTGTTGTACTGGGACATGGTTTCAAGCGTAAGATGAGAGGAGAGAGGGGAGGTAAATACATGAGGAGTAATGATGGGTCAAGAAAACCAAGGGAACTTCCAAAACCTAGGCAGGTTACATCTTTCATATGTGAGTTGTGCAATGTTAAATGTGAGTCCCAGGTTGTCTACAATAGTCATTTGACTGGGAAGAAGCACTTATCAAATTTCAAGCGTGTCCATGGACACCAAACTTTGAATGGAGAAGCAGGGATCCAACCACCTCAGCCATCTGACATCAATGCTCTGACAAATTCAAATAATTTTCCAGTACAGCAAGGTATTGGTGATCCACAGGTCCTTTTGGCTCAGCTCCTGATGACTGTGCTATCAAGAGTCCCAGTACTAGCAACAGCACCACCAGCAGGTCCGGTGGCTGCTCAGTTACAAGTGCCCCCTTCAGTGGCTGGATCAAGCCATGAACCCCTTTCTCAAAATTTAACTCAGACACAAGTCTCAGATTCATTACCACATTTTGAGAGTGAGAATCCTACAGGGGAAACAAAAAATCAGATGTCATCTAGCTCACTGTAA | 1416 | 0.4753 | MNSSGYEYDQPQPSSVYPPRLPIAPEPPNSAQPSQTHKLNPVQGPPVPGSVKPAAAAAVAGALPQLVGSVDGVRREPIGLSQYRGRGRRGGRQFRGVGRGRVNHPHGRGLNHPRGRGRGRGGNGRQFPSHSSEPSISNKADTAGAAGATSVVQPSSVPRKSPLTNPAQIPTASLQVPPCKLWCEICKAECNTPEMLEQHKNGKRHRKNLLVHEELQRLRAINGQQGESISNSRSNLTIQPEKVHNAEATADNHKAETEVWNNVGGKSDVQSEELQEEPGEKAVVLGHGFKRKMRGERGGKYMRSNDGSRKPRELPKPRQVTSFICELCNVKCESQVVYNSHLTGKKHLSNFKRVHGHQTLNGEAGIQPPQPSDINALTNSNNFPVQQGIGDPQVLLAQLLMTVLSRVPVLATAPPAGPVAAQLQVPPSVAGSSHEPLSQNLTQTQVSDSLPHFESENPTGETKNQMSSSSL* | 472 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr10g0117 | 471 | MobiDBLite | consensus disorder prediction | 125 | 171 | - | - | |
Apr10g0117 | 471 | Pfam | Zinc-finger of C2H2 type | 182 | 205 | - | - | |
Apr10g0117 | 471 | Pfam | Zinc-finger of C2H2 type | 323 | 347 | - | - | |
Apr10g0117 | 471 | MobiDBLite | consensus disorder prediction | 88 | 119 | - | - | |
Apr10g0117 | 471 | PANTHER | GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12-LIKE | 6 | 449 | - | - | |
Apr10g0117 | 471 | SMART | ZnF_U1_5 | 180 | 212 | IPR003604 | GO:0003676|GO:0008270 | |
Apr10g0117 | 471 | SMART | ZnF_U1_5 | 320 | 354 | IPR003604 | GO:0003676|GO:0008270 | |
Apr10g0117 | 471 | MobiDBLite | consensus disorder prediction | 1 | 171 | - | - | |
Apr10g0117 | 471 | MobiDBLite | consensus disorder prediction | 427 | 471 | - | - | |
Apr10g0117 | 471 | Gene3D | Classic Zinc Finger | 157 | 212 | - | - | |
Apr10g0117 | 471 | Gene3D | Classic Zinc Finger | 304 | 353 | - | - | |
Apr10g0117 | 471 | SUPERFAMILY | beta-beta-alpha zinc fingers | 159 | 209 | IPR036236 | - | |
Apr10g0117 | 471 | PANTHER | OS06G0651300 PROTEIN-RELATED | 6 | 449 | - | - | |
Apr10g0117 | 471 | MobiDBLite | consensus disorder prediction | 15 | 29 | - | - | |
Apr10g0117 | 471 | SUPERFAMILY | beta-beta-alpha zinc fingers | 317 | 354 | IPR036236 | - | |
Apr10g0117 | 471 | SMART | c2h2final6 | 323 | 347 | IPR013087 | - | |
Apr10g0117 | 471 | SMART | c2h2final6 | 181 | 205 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr10g0117 | Apr-Chr10 | 2989664 | 2995669 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr10g0117 | 323 | 347 | C2H2 Transcription Factor Family | AT5G61190 | 68.000 | 2.04e-06 | 48.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Apr10g0117 | zf-met | 2.9e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr10g0117 | - | - | aprc:113849925 | 866.685 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Apr10g0117 | 10 | 2989664 | 2995669 | Apr10g0117 | 10 | 2989664 | 2995669 | ECH |