Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0117 ATGAATTCTTCTGGCTACGAATACGATCAACCCCAACCCTCTTCGGTTTACCCTCCTCGCCTCCCAATCGCCCCTGAACCGCCTAATTCTGCTCAACCCTCACAAACCCACAAGCTCAACCCGGTTCAGGGACCGCCAGTTCCCGGTTCCGTTAAACCTGCGGCAGCGGCAGCGGTAGCAGGAGCTCTCCCTCAGCTTGTAGGGAGCGTTGACGGAGTCCGGAGAGAACCGATTGGGCTATCTCAATACAGAGGTAGAGGTCGCAGGGGTGGTCGACAATTTAGAGGTGTTGGGCGTGGCCGAGTGAATCACCCCCATGGTAGGGGACTGAATCACCCCCGTGGTAGGGGACGTGGTAGGGGTGGTAATGGTAGACAGTTCCCATCTCATTCTTCTGAACCCTCCATTTCTAATAAAGCTGACACAGCTGGTGCTGCTGGAGCCACTTCGGTGGTGCAACCATCATCAGTCCCCCGGAAGTCACCATTAACTAATCCAGCACAAATTCCTACTGCATCATTGCAGGTCCCACCATGTAAGTTGTGGTGTGAAATTTGTAAGGCAGAGTGTAATACTCCAGAAATGTTGGAGCAGCATAAGAATGGAAAGCGGCATCGGAAGAATTTGCTAGTGCATGAAGAATTGCAAAGACTCAGAGCTATAAATGGACAACAGGGTGAAAGTATTTCTAATTCTCGATCAAATTTAACAATCCAGCCTGAGAAAGTTCACAATGCTGAAGCTACAGCTGATAATCACAAGGCTGAAACTGAGGTTTGGAATAATGTGGGAGGAAAATCTGATGTTCAATCTGAAGAGCTTCAGGAGGAACCTGGAGAAAAAGCTGTTGTACTGGGACATGGTTTCAAGCGTAAGATGAGAGGAGAGAGGGGAGGTAAATACATGAGGAGTAATGATGGGTCAAGAAAACCAAGGGAACTTCCAAAACCTAGGCAGGTTACATCTTTCATATGTGAGTTGTGCAATGTTAAATGTGAGTCCCAGGTTGTCTACAATAGTCATTTGACTGGGAAGAAGCACTTATCAAATTTCAAGCGTGTCCATGGACACCAAACTTTGAATGGAGAAGCAGGGATCCAACCACCTCAGCCATCTGACATCAATGCTCTGACAAATTCAAATAATTTTCCAGTACAGCAAGGTATTGGTGATCCACAGGTCCTTTTGGCTCAGCTCCTGATGACTGTGCTATCAAGAGTCCCAGTACTAGCAACAGCACCACCAGCAGGTCCGGTGGCTGCTCAGTTACAAGTGCCCCCTTCAGTGGCTGGATCAAGCCATGAACCCCTTTCTCAAAATTTAACTCAGACACAAGTCTCAGATTCATTACCACATTTTGAGAGTGAGAATCCTACAGGGGAAACAAAAAATCAGATGTCATCTAGCTCACTGTAA 1416 0.4753 MNSSGYEYDQPQPSSVYPPRLPIAPEPPNSAQPSQTHKLNPVQGPPVPGSVKPAAAAAVAGALPQLVGSVDGVRREPIGLSQYRGRGRRGGRQFRGVGRGRVNHPHGRGLNHPRGRGRGRGGNGRQFPSHSSEPSISNKADTAGAAGATSVVQPSSVPRKSPLTNPAQIPTASLQVPPCKLWCEICKAECNTPEMLEQHKNGKRHRKNLLVHEELQRLRAINGQQGESISNSRSNLTIQPEKVHNAEATADNHKAETEVWNNVGGKSDVQSEELQEEPGEKAVVLGHGFKRKMRGERGGKYMRSNDGSRKPRELPKPRQVTSFICELCNVKCESQVVYNSHLTGKKHLSNFKRVHGHQTLNGEAGIQPPQPSDINALTNSNNFPVQQGIGDPQVLLAQLLMTVLSRVPVLATAPPAGPVAAQLQVPPSVAGSSHEPLSQNLTQTQVSDSLPHFESENPTGETKNQMSSSSL* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0117 471 MobiDBLite consensus disorder prediction 125 171 - -
Apr10g0117 471 Pfam Zinc-finger of C2H2 type 182 205 - -
Apr10g0117 471 Pfam Zinc-finger of C2H2 type 323 347 - -
Apr10g0117 471 MobiDBLite consensus disorder prediction 88 119 - -
Apr10g0117 471 PANTHER GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12-LIKE 6 449 - -
Apr10g0117 471 SMART ZnF_U1_5 180 212 IPR003604 GO:0003676|GO:0008270
Apr10g0117 471 SMART ZnF_U1_5 320 354 IPR003604 GO:0003676|GO:0008270
Apr10g0117 471 MobiDBLite consensus disorder prediction 1 171 - -
Apr10g0117 471 MobiDBLite consensus disorder prediction 427 471 - -
Apr10g0117 471 Gene3D Classic Zinc Finger 157 212 - -
Apr10g0117 471 Gene3D Classic Zinc Finger 304 353 - -
Apr10g0117 471 SUPERFAMILY beta-beta-alpha zinc fingers 159 209 IPR036236 -
Apr10g0117 471 PANTHER OS06G0651300 PROTEIN-RELATED 6 449 - -
Apr10g0117 471 MobiDBLite consensus disorder prediction 15 29 - -
Apr10g0117 471 SUPERFAMILY beta-beta-alpha zinc fingers 317 354 IPR036236 -
Apr10g0117 471 SMART c2h2final6 323 347 IPR013087 -
Apr10g0117 471 SMART c2h2final6 181 205 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0117 Apr-Chr10 2989664 2995669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0117 323 347 C2H2 Transcription Factor Family AT5G61190 68.000 2.04e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr10g0117 zf-met 2.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0117 - - aprc:113849925 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0117 10 2989664 2995669 Apr10g0117 10 2989664 2995669 ECH